Ruminococcus champanellensis: RUM_19660
Help
Entry
RUM_19660 CDS
T02600
Name
(GenBank) DNA polymerase III catalytic subunit, PolC type
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
rch
Ruminococcus champanellensis
Pathway
rch03030
DNA replication
rch03430
Mismatch repair
rch03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RUM_19660
03430 Mismatch repair
RUM_19660
03440 Homologous recombination
RUM_19660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rch03032
]
RUM_19660
03400 DNA repair and recombination proteins [BR:
rch03400
]
RUM_19660
Enzymes [BR:
rch01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RUM_19660
DNA replication proteins [BR:
rch03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RUM_19660
DNA repair and recombination proteins [BR:
rch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RUM_19660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
HHH_6
tRNA_anti-codon
RNase_H_2
Rv2179c-like
DEDDh_C
DNA_pol3_a_NI
YhfH
Motif
Other DBs
NCBI-ProteinID:
CBL18001
UniProt:
D4LEF6
LinkDB
All DBs
Position
2073369..2077703
Genome browser
AA seq
1444 aa
AA seq
DB search
MELKLADFLADLAPELPAAALEGMLYRLTYTENRTEMTFHVRYDQVLDAETMFAFETALE
HRLSLSRVTLACRYAPELFTLETSYSSLISQLKRRMSVLNGFLDHAGVKREADKLAISLV
HGGREILEQAGFCRALSMLIQEQYGLQLLVELSGENAPPATQHEELIAKVAAAIPQHRDQ
LTAPASGSTGKAAAPKVVAANAALLHLPFEVEEGSALVIRGGTIKEQPISLQEATGRLDT
KVVVWGDIFDIPDRKEVKNGQKTILSYYITDYTGSIMLKMFIDTKKLSEAAYDKLKNGCT
VVAKGNIEFDTFNKDITMMPMDLMLVKRKIRMDNAPKKRVELHMHTTMSAMDAVSSASDL
IARAQAWGHHAIAITDHGVAQAFPEAMNAIGKAKDFKVIYGCEAYVVNDIAERKILIGET
DKTVNDTIIIFDVETTGLSAERDRLTEIGAIKVKNMRVADSFHTYVNPERPIPPEITDLT
GIHEGMVAEAPKASQALKEFFAFCGEDPVLVAHNARFDTSFIDAAAGRAGQRYAYAYIDS
LVLCQAMLPDLAKHKLNVVAKHLKLGKFDHHRADNDAMMLAKIYLELVGRLITEKKLEYL
SELNTKVQKIDARKLKSFHQIILAKNQTGLKNLYRLISYGHIDCFYKKPLMPKSQLLKYH
EGLLFGSACEAGELFRAMVDGRPYAELLELAKFYDYLEIQPLGNNAFMLRNGTAESEDDL
KNWNRMICKIGDDLGLPVVATCDVHFMDPKDGKYRQILMAGNGFKDADQQAPLYLRTTDE
MLEEFSYLGQEKAYEVVVENTNRIADLIDFVRPIPKGTFTPNIEGAEEDLTRITNNRARE
IYGDPLPEIVAKRLDRELSSIIKHGFSVLYIIAQKLVSNSEEHGYLVGSRGSVGSSFVAS
MAGISEVNPLAPHYVCPKCKHSEFITDGSYGSGFDLPAKNCPNCGIEMRRDGHDIPFETF
LGFDGDKAPDIDLNFSGEYQSSAHRYTEELFGRANVFKAGTISTVAEKTAFGYAKHFLED
RNESQNPAEENRLAKGCTGVKRTTGQHPGGMVVVPSDYDVYDFTPVQHPADSADSDVITT
HFDFHSLHDTILKLDELGHVVPTLYKHLEDLTGIKIADVPTTDPDVIRMCTDVSVLGVTK
EDVYCPTGSLGIPEMGTNFTIGMLMDAKPTKFSDFLQISGLSHGTDVWLGNAKDLIENKT
CTISEVIGTRDSIMTYLLYKGVEPKQAFQIMEDTRKGKAPKTFTPERIQMLKDHNVPQWY
IDSCLKIKYMFPKAHAAAYVIAAIKLGWFKLHKPLEFYSTYFTVRGGDFDADLAVRGIAA
VRNRIEELRALGNDRSKKENDLYDILLIVNEMMSRGYEFLPIDLYKSHAVKYLIEDGKIR
IPFGALSGVGEAAAMSLYETAQARDFVSIEEFQNKCGASKTIVDTLESIGALGALPKSSQ
MTLF
NT seq
4335 nt
NT seq
+upstream
nt +downstream
nt
atggaattgaaactggctgactttttggcggatctggcaccggaactgccggctgccgca
ctggaaggtatgctctaccgtctgacctatacggaaaatcgcacggaaatgacctttcat
gtgcggtacgaccaggttctggatgcagaaaccatgtttgcctttgaaacggcactggag
catcggctgtccctgtcccgggtgacccttgcctgccggtatgcgccggagctgttcacc
ctggaaacaagctattcatcactgatttcccagctgaaacggcgcatgtccgtgctcaat
ggctttctggatcatgccggagtgaaacgggaggcggacaagcttgccatttctctggtg
catgggggacgggagatcctggagcaagccggattctgccgggctttgagcatgctgatt
caggagcagtacggcttgcagcttctggtagagctgtccggagagaacgctccccctgcc
acccagcatgaggaactgatcgcaaaggttgcagcagccattcctcagcaccgggatcaa
ctcactgcgcctgcatccggcagtaccgggaaagcagcagctcccaaggtggttgctgcc
aatgcggcgctgctgcatctgccctttgaggtcgaagaaggctctgccctggtgatccgg
ggcggcaccatcaaggaacagcccatttccctccaggaggctaccggcagactggatacc
aaggtggtggtatggggagatattttcgacataccagaccggaaagaggtcaaaaacgga
cagaaaaccattctcagctattacatcaccgactataccggctccattatgctgaaaatg
ttcattgacactaaaaagctgtccgaagcagcatacgacaagctgaaaaacggctgcacg
gtagttgcaaaggggaatattgagttcgatacctttaataaggacatcaccatgatgccc
atggatctgatgctggtgaagcggaagatccgcatggacaatgcaccgaaaaagcgggtg
gagctgcacatgcatactaccatgtccgccatggacgctgtcagttctgcatccgatctc
atcgcccgtgcccaggcgtggggacatcacgccattgccattacggatcacggagtagct
caggcgttcccggaagccatgaacgccatcggcaaagcgaaggattttaaggtgatctac
ggctgtgaggcgtatgtggtcaacgacattgcggagcgaaagatcctcatcggggaaacc
gacaagaccgtcaacgacacgatcattatttttgatgtggaaaccactggactcagtgcg
gaacgggatcggctcacggagattggtgccatcaaggtcaagaatatgcgggtggcggac
tcctttcacacctatgtgaacccggagcgtcccattcctccggagatcacagatctgacc
ggaattcatgagggcatggtagcagaagctccaaaggcgtcccaggcgctgaaagaattt
tttgccttctgcggagaggatccggtgctggttgcccataacgcccggttcgataccagc
tttatcgatgcggctgcgggcagggcggggcagcggtacgcttatgcttacatagacagt
ctggtgctgtgtcaggctatgctgccggatcttgcaaagcataagctgaacgttgtggca
aagcacctgaagctggggaagtttgaccatcaccgggcagacaacgacgcaatgatgctt
gcaaaaatctatctggagcttgtgggacgactgatcacggaaaaaaagctggagtatttg
tcggagctgaacaccaaggtacagaagatcgatgcaaggaagctgaaatccttccaccag
atcattctggcgaaaaaccagaccggactaaaaaatctgtatcggctgatctcctacgga
cacattgactgcttctacaaaaagcccttgatgccaaagtcccagctgcttaagtaccat
gagggattgctgttcggcagtgcctgtgaggcgggggaactgttccgtgccatggtggac
ggcagaccctatgcggaattgctggagcttgcgaaattttatgattatctggaaatccag
cctctgggaaacaatgcgttcatgctccggaatggtacggcagaatctgaagacgatctg
aaaaactggaaccggatgatctgtaagatcggggacgatctgggattgcccgtggtcgcc
acctgtgacgtgcatttcatggatcccaaggacggaaaataccggcagattttgatggct
ggcaatggctttaaggatgcggatcagcaggcacccttgtatctgcgcaccactgatgaa
atgctggaggaattctcttacctgggacaggaaaaggcatacgaggtagtggtggaaaac
acaaaccggatcgccgatctcattgattttgtacgtcccatccccaagggcacctttacc
ccgaatatcgaaggggcggaggaggatctgacccggatcaccaacaaccgggcaagggag
atctacggggatcccctgccggagatcgtggctaagcggctggatcgggagctgtcctcc
atcatcaagcatggcttttccgtgctgtatattatcgcccagaagctggtttccaactcg
gaggagcatggctatctggtaggatcccgtggatccgttggctcctcctttgtggcatcc
atggcaggcatttcggaggtcaatccgctggcacctcactatgtatgccccaaatgcaag
cacagcgaatttatcacagacggcagctatggctccggttttgatctgccggcaaagaac
tgtcccaactgcggcattgaaatgcgccgggatgggcacgatattccctttgaaaccttc
ctgggctttgacggggacaaggcgccggatattgatctgaatttctccggcgagtatcag
tcctccgcccaccggtatacggaggagctgtttggaagagccaacgtgttcaaggcgggt
accatcagtaccgttgcggagaaaaccgcattcggatacgccaagcattttctggaggat
cggaatgaatcccagaatccggcagaggaaaatcggcttgccaagggctgtaccggcgta
aagcgcaccaccggacagcatccgggaggcatggtggttgtgccctccgactatgatgta
tatgactttaccccggtacagcatccggcggacagtgcggattccgacgtcatcacaacc
cacttcgactttcacagcctgcatgataccattctgaagctggatgagctgggacacgta
gtgcccaccctgtacaagcatctggaggatctgaccggcatcaagattgcggacgttccc
actacggatccggacgtgatccgtatgtgtacggacgtatccgtgcttggggtcaccaaa
gaggacgtttattgtcccaccggcagtctgggcatcccggagatgggtaccaatttcacc
attggcatgctgatggacgcaaagccaactaagttcagcgactttttgcagatttccggt
ctgtcccatggtacggatgtatggcttggcaacgcaaaggatctgattgagaacaagacc
tgtaccatttctgaggtaatcggtacccgagacagcatcatgacctatctgctatataag
ggggtcgagcccaagcaggcgttccagatcatggaggacacccgtaagggtaaggcaccg
aaaacctttaccccggagcggatccagatgctgaaggatcacaacgtaccccagtggtac
atagacagctgtttgaagattaagtacatgttccccaaggcccatgcggcagcctatgtt
atcgcagccatcaagctgggctggttcaagctccacaagcccctggaattttactccacc
tattttactgtccgtggtggagattttgatgcggatctggcagtccggggcattgctgcc
gtccggaaccgaattgaggagttgcgtgcccttggaaatgaccggagcaagaaggaaaac
gacctgtatgatatcctgctgatcgtcaacgaaatgatgtccagagggtatgagttcctg
cccatcgatctgtataaatcccatgcagtgaagtacctgattgaggacggaaagatccgg
attccttttggtgcgttgtctggcgtgggagaagcagcggctatgagcctgtatgagacc
gcacaggcacgggattttgtatccatcgaggagttccagaacaagtgcggtgcgtcaaaa
accatagtggataccctggaaagcatcggcgctttgggcgcattgccgaaatccagtcag
atgacgctgttctaa
DBGET
integrated database retrieval system
