Ruminococcus champanellensis: RUM_19790 Help Entry RUM_19790         CDS       T02600                                  Name (GenBank) DNA ligase, NAD-dependent   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism rch  Ruminococcus champanellensis Pathway rch03030   DNA replication rch03410   Base excision repair rch03420   Nucleotide excision repair rch03430   Mismatch repair Brite KEGG Orthology (KO) [BR:rch00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     RUM_19790    03410 Base excision repair     RUM_19790    03420 Nucleotide excision repair     RUM_19790    03430 Mismatch repair     RUM_19790  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:rch03032]     RUM_19790    03400 DNA repair and recombination proteins [BR:rch03400]     RUM_19790 Enzymes [BR:rch01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      RUM_19790 DNA replication proteins [BR:rch03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      RUM_19790 DNA repair and recombination proteins [BR:rch03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      RUM_19790    NER (nucleotide excision repair)     GGR (global genome repair) factors      RUM_19790    MMR (mismatch excision repair)     DNA ligase      RUM_19790   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       RUM_19790 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_5 HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT BRCT_2 HHH zf-NADH-PPase RNA_pol_A_CTD RepA_C RNA_ligase Auto_anti-p27 5_3_exonuc Motif Other DBs NCBI-ProteinID:  CBL18014 UniProt:  D4LEG9 LinkDB All DBs Position 2086978..2088960 Genome browser AA seq 660 aa AA seqDB search MDFEQAKLRLAQLTKEIEQHNYAYYVLDAPTIEDCDYDALMRELKAIETEYPQLLSPHSP SQRVGGMALSDFQKVTHTVQMGSLRDVFSFEEVAAFVAECQQKLDAPRFTVEPKIDGLSV SLLYENGVLTCGSTRGDGFVGEDVTGNIRTIRSIPLRLEDAPALLEVRGEVFMPRDSFLK LVEQQELADEQPFKNPRNAAAGSLRQKHAEVTAKRRLDIFVFNVQQMTGGLHGTHAESLT WMRKLGFKTVEFRLCETYQEIREQISRIGEERAKLPYDIDGVVIKVNDLAQRQVMGATTK VPKWAVAYKFPPEEKETRLQKIEVNVGRTGAITPVAVFDPITLAGTSVSRAVLHNQQFIA DKDIRVGDMIRVRKAGEIIPEVLASVSHQPDSVPYTLPTHCPVCGTEAVRDPEESVLRCP NTDCPAQLLKNVIHFASKGAMNIDGMGPAIAQALLDNGKIRSVADLYTLTMEDLLSLDRF AEKSARNLLDAIEKSKSAPLDRVIFGLGIRGIGQRAAVLLCDRFPSVEQIMNASVEQLAE IDGFGSIMAESVVQAFREPHRVALVQRLQACGVTMQYQAAQAQDQRFVGMTFVLTGTLPT MKRDEAKKLIESFGGKVSGSVSKKTSVVVAGEDAGSKLMKAESLGVEVIDEAELLRRTGA NT seq 1983 nt NT seq  +upstreamnt  +downstreamnt atggactttgaacaagcaaagctgcggctagcccagctgaccaaggagattgaacagcat aattatgcctactatgtgctggatgcccccaccattgaggactgtgactatgatgcactg atgcgggagctgaaggccattgaaacagagtatccccagttgctcagtccccattccccc tcccagcgggtaggcggcatggcactcagcgattttcagaaggtgacccatacggttcag atgggcagtttgcgggatgtattctcctttgaggaggttgcggcttttgtggcagagtgt cagcagaagctggatgccccccggtttacggtagagccgaaaatcgatggtttgtccgta tccctgctgtatgaaaacggggtgctgacctgcggttccacccggggggacggctttgtc ggggaggatgtgaccggaaatatccggacaatccgatccatccccctgcggctggaggat gcaccagccttgctggaggtgcgtggtgaggtattcatgccccgggacagctttttgaag ttggtagagcagcaggaacttgcggacgagcagcccttcaagaatcccagaaatgcggca gccggatctctgcggcaaaagcatgcggaggttacagcaaaacgacggctggacattttt gtgttcaatgtgcagcaaatgacaggcggactccacggtacccatgcggaatctctgacc tggatgcggaagctgggcttcaaaacggtggagttccggctttgtgaaacctaccaggag atccgggaacagattagccgcatcggagaggaacgtgccaagctgccctatgatattgac ggcgtagtcatcaaggtcaatgaccttgcccaacggcaggtgatgggtgccaccaccaag gtgcccaaatgggcagtggcatacaaatttccgccggaagagaaggaaacccggctgcag aaaattgaggtgaatgttgggagaaccggtgccattacgccggtagcggtgtttgatccc atcacccttgcaggcaccagcgtcagccgggcagtgctgcacaaccagcagtttatcgcc gataaggacattcgggtgggagatatgatccgggtgcgaaaggcgggggagatcattccg gaggtactggcttccgtatcccatcagccggattcggtgccctatacattgcccacccac tgtccggtatgcggcacggaggctgtccgggatccggaggaaagtgtgctgcgctgtccc aatacggactgtccggcacagctgttgaagaatgtgatccactttgccagcaaaggggca atgaacattgacggcatgggccccgccattgcgcaagcgctgctggacaacggaaagatc cgctccgttgcggatctgtacactttgaccatggaggatctgctgtccctggatcgcttt gcagagaaatccgcccggaatctactggatgccattgaaaaatccaagtcggctcccctg gatcgggtgatcttcgggcttggcatccggggcatcggacagcgtgcagcagtattgctt tgcgatcgtttccccagtgtggagcagatcatgaatgcctctgtggagcagcttgctgag attgacggctttggaagcattatggcggagagcgtggtgcaggcgtttcgggagccgcac cgggtggcattggtgcagcggctgcaggcatgcggtgtgaccatgcagtaccaggcggcg caggcacaggatcagcgttttgtgggcatgacctttgtgctgaccggcacgctgcctacc atgaaacgggatgaagcgaaaaaactgatcgaatcctttggtggcaaagtatccggcagt gtatccaagaaaacctcggtggtggttgccggagaggatgcgggcagcaagctgatgaaa gcggaaagccttggcgtggaagtcattgatgaagctgagctgctgcgccggacgggagca taa

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