Methanocella arvoryzae: RCIX1966
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Entry
RCIX1966 CDS
T00526
Name
(GenBank) conserved hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rci
Methanocella arvoryzae
Pathway
rci03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RCIX1966
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rci03400
]
RCIX1966
Enzymes [BR:
rci01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RCIX1966
DNA repair and recombination proteins [BR:
rci03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RCIX1966
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
CAJ37130
UniProt:
Q0W3B3
LinkDB
All DBs
Position
1110242..1111138
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AA seq
298 aa
AA seq
DB search
MTARVTTDSDRVELSHPDKVLFPEDGITKQELADYFRDVAEFMLPQVRDRPMTLQRFPNG
IGEPGFYQKEAPSYLPEWIDTVTFPLREEGREQRQILCNSAATLAYLADQGSITQHVWLS
RADRLEYPDRMIFDLDPPDDDFSIVKFAANTLRAKLKHLGIPAFPMTTGSRGLHVVVPLD
RSVDFDTVRAWAAEFARKLAWAVPDSFTTELRKESRGDRLFIDYTRNAYGQTTVAPYTVR
AKKGAPVAMPVSWEELEDLESSQAYNIRNIVKHLRETGDPWRDIDRHAGKLPALQEKK
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgactgcacgagttaccaccgattcagatagagtcgaactctctcacccagataaagta
ctatttccagaggacggcatcaccaagcaggagctggccgattatttccgggacgtggca
gagtttatgctgcctcaggtccgggatcggccgatgaccttgcagcgtttcccgaacggc
atcggggagcccggcttctaccagaaagaggccccttcttacctgcctgagtggattgac
accgtcacctttccgctccgggaggagggccgggagcagcgccagatcctgtgcaatagc
gctgctacgctggcttatctggccgaccagggctcgattacccagcacgtctggcttagc
agggccgaccggctggagtacccggaccggatgatcttcgacctcgacccgcccgacgac
gattttagcattgtcaaattcgcggcgaacaccctccgggcgaagctgaaacatcttggc
atacccgcctttcccatgactaccggctcccgcggcctgcacgtcgtcgtcccgctcgac
aggtccgtcgacttcgatacagtcagggcatgggctgcggaattcgcccggaagctggcc
tgggcagtccccgacagcttcaccacagagctccgaaaggaaagccgcggcgacaggctg
ttcatcgactataccagaaacgcctacggccagaccaccgtcgcaccatacacagtccga
gcgaaaaagggcgcacccgtggcgatgccggtaagctgggaagagctggaagacctcgaa
tcatcgcaggcctacaacatccgcaatattgtaaagcacctcagagagactggagacccg
tggagagatatcgaccgccatgcggggaagctccctgctttgcaggagaaaaaataa
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