Methanocella arvoryzae: RRC227
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Entry
RRC227 CDS
T00526
Symbol
lig
Name
(GenBank) ATP-dependent DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
rci
Methanocella arvoryzae
Pathway
rci03030
DNA replication
rci03410
Base excision repair
rci03420
Nucleotide excision repair
rci03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RRC227 (lig)
03410 Base excision repair
RRC227 (lig)
03420 Nucleotide excision repair
RRC227 (lig)
03430 Mismatch repair
RRC227 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rci03032
]
RRC227 (lig)
03400 DNA repair and recombination proteins [BR:
rci03400
]
RRC227 (lig)
Enzymes [BR:
rci01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RRC227 (lig)
6.5.1.6 DNA ligase (ATP or NAD+)
RRC227 (lig)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
RRC227 (lig)
DNA replication proteins [BR:
rci03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
RRC227 (lig)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
RRC227 (lig)
DNA repair and recombination proteins [BR:
rci03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
RRC227 (lig)
NER (nucleotide excision repair)
Other NER factors
RRC227 (lig)
MMR (mismatch excision repair)
Other MMR factors
RRC227 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Arginosuc_synth
Motif
Other DBs
NCBI-ProteinID:
CAJ37972
UniProt:
Q0W0X1
LinkDB
All DBs
Position
304438..306144
Genome browser
AA seq
568 aa
AA seq
DB search
MLFKELVSLYESLRSTSSRLEKTAMIAAFLQQAPVDELPVIVTFLTGRIFPEWDQRKIGI
ASQSMIKIISTITHNPEDAVVESYKKTGHLGVTAEEMFQKRRQVTFFEPEDITVKEVAET
FYEIARSSGAGSSAKKQKILIGLLHRATTPKEAHYIVSLTIEYVLSGAKEGVMEDAIGQA
FGATLDQVRRAHMLTSDLGETARIAKTEGAAGLEAITIRPMRPVRPMLAQNVSSIREALD
TMGGVAEFEMKYDGARLQIHKVGKDVKLYSRRLEDLTDALPEIVGYVRESVKSDTAILDS
ECIAIDKDTGRPIPFQNILTRLRRIHKVEETQKQFPLILRPFDVLFNQGQSTIDLPLRER
RKILEEIVIATDSVIQPARALVTDQEEKAQELFEESVKSGNEGLMGKDLNATYTPGVRGK
KMVKIKSVLDTLDLAIVSAEWGHGRKAGWLTSFEVAALDEETGDYVILGRVASGFSDEQL
IEMTEKLKPLITGEHGRIVDVRPEIIVEVKFEEIQKSPIYSSGYALRFPRLVRVRDDLSP
EEVNSFTRVMNIYNVQQRYSISENGLRK
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgctattcaaggagcttgttagcctgtatgagagcctgcgtagtacttccagcaggcta
gaaaagacggcaatgatcgcagcatttttacagcaggcgcctgtcgatgagcttcctgtg
atcgtcacatttctgaccggccggatcttcccggagtgggatcagcggaagatcggcatt
gccagccagtcgatgatcaagatcatctcgacgatcactcataatcccgaagatgccgtc
gtcgagagctacaagaaaactggccatttgggggttacagcggaggagatgtttcagaag
cggaggcaggtcacctttttcgagccggaggatataacggtcaaagaagtggctgagacg
ttctacgagatcgccaggtcttcgggggctggctcctccgctaagaagcagaagatactc
ataggcctcctgcaccgtgccacaactccaaaagaagcccactatattgtcagcctgacc
atcgagtacgtgctttcgggcgccaaggaaggcgtgatggaggacgccatagggcaggca
ttcggggccacgcttgatcaggtacgccgggctcacatgctgaccagcgatctgggcgag
accgcccgcattgccaaaacagagggagcagcgggcctggaggcgatcactataaggccg
atgaggcctgtgcggcctatgcttgcccagaacgtttcgagcatacgtgaagcgctggac
acgatgggaggcgtcgccgagttcgagatgaagtacgacggggcgaggctgcagatacac
aaggtcggcaaagatgtaaagctatactcccgcaggctggaagacctgaccgatgcgctg
ccagaaatcgtcggctatgtcagggagagcgtgaagtccgatactgccatcctcgacagc
gaatgcatagctatcgataaggatacgggccggccaattcctttccagaatatcctgacc
aggctgcggcgcatacacaaggtggaggaaacccagaaacagttccccctgatcttgcgg
ccttttgatgttctctttaaccagggtcagagtactatcgatctgcccctgcgggaacgc
aggaagatactggaagagatcgtcattgcaacagacagcgttatccagcctgccagggca
ctggtcactgaccaggaagaaaaagctcaggaactgtttgaggagtctgtgaaaagcggc
aacgaaggcttgatgggcaaggacttgaacgcaacttataccccaggcgtcagaggtaag
aagatggtcaagatcaagtctgtgctcgacactttagacctggccatcgtctcagcggaa
tggggccacggcagaaaagcaggctggcttacgtcttttgaagtagctgcactggatgag
gagaccggcgattacgtcatactgggcagagtagccagcggcttctctgatgagcaactg
attgagatgacggaaaagctgaagccgctcatcacgggcgagcacggccgcatcgtcgac
gtccggccagagattatcgtcgaggtcaagttcgaggagatccagaaaagtcccatatac
agcagtggctatgcgctgcgcttcccaaggctggtccgggtcagagacgacctgagccct
gaagaagtcaacagcttcaccagggtcatgaacatctataacgttcagcagcggtatagc
atctcggaaaacggtttaagaaaatag
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