Rosa chinensis (China rose): 112169248
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Entry
112169248 CDS
T06020
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
112169248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112169248
03009 Ribosome biogenesis [BR:
rcn03009
]
112169248
04131 Membrane trafficking [BR:
rcn04131
]
112169248
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rcn04147
]
112169248
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
112169248
Ribosome biogenesis [BR:
rcn03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
112169248
Membrane trafficking [BR:
rcn04131
]
SNARE
SNARE associated proteins
Others
112169248
Autophagy
Aggrephagy
Other aggrephagy associated proteins
112169248
Exosome [BR:
rcn04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
112169248
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_5
AAA_2
AAA_33
AAA_22
AAA_14
TIP49
RNA_helicase
AAA_28
AAA_18
Parvo_NS1
nSTAND3
Mg_chelatase
AAA_17
IstB_IS21
ATPase_2
AAA_7
AAA_24
Vps4_C
Bac_DnaA
DUF815
Zeta_toxin
Sigma54_activat
NACHT
NB-ARC
ABC_tran
TsaE
Viral_helicase1
ResIII
SLFN-g3_helicase
UFD1
Rad17
bpMoxR
Motif
Other DBs
NCBI-GeneID:
112169248
NCBI-ProteinID:
XP_040365302
LinkDB
All DBs
Position
6:15044846..15048110
Genome browser
AA seq
800 aa
AA seq
DB search
MTNQREGTNKRDFSTAILDRKKAPNRLVVDEAVVDDNSTIQLCPETMEKLQLFRGDTVLI
KGKKHRDTICIALADDTCEEPKIRMNKVVRNNLRVRLGDVVSIHQCADVKYGNRVHILPI
DDTIEGITGNLFDAYLKPYFQEAYRPVRKGDLFLVRGGMRSVEFKVVETDPPEYCVVASD
TEIFCEGEPVRRDDEERLDEVGYDDIGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKG
ILLYGPPGTGKTLIARAVANETGAFFFCINGPEIMSKMAGESESNLRKAFEEAEKNAPSI
IFIDEIDSIAPKREKTNGEIERRIVSQLLTLMDGLKSRAHVIVMAATNRPNSIDPALRRF
GRFDREIDIGVPDEVGRLEVLHIHTKNMKLAEDVDLERVAKDTHGYVGADLAALSTEAAL
QCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVTWDAIG
GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARASAPCVLFFDELDSIATKRGSSAGDSGGADRVL
NQLLTEMDGVSAKKTVFIIGATNRPDIIDPALLRPGRLDQLLYIPLPDEESRYQIFKSCL
RKSPVSKYVDLSALAKHTPGFSGADITEICQRACKYAIRDNIEKDIERERRRSENPEIME
DDENEVAEITAAHFEESMKYARRSVSDADILKYQAFATTLHQARGFGADEFRFPSGSGAA
IGSDPFATTNAGEADEDLYD
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaccaacgtgaaggaacaaataagcgggacttcagcaccgcgattctggaccgc
aagaaggctccaaatcgccttgttgtcgatgaagcagtggtggatgacaactccaccatc
caactctgcccggagaccatggagaagctccagctctttcgtggcgacacagtcttgatc
aagggaaagaagcatagagacacaatctgtattgctcttgctgatgacacctgtgaagaa
ccaaagataaggatgaacaaggttgtgaggaacaaccttagggttaggcttggtgatgtt
gtttccattcaccaatgcgctgatgtcaagtatggaaaccgtgtccacattcttcctata
gatgacacaatcgaagggatcactggaaatctgtttgatgcctacttgaagccttatttc
caggaagcctaccgcccggtgaggaaaggcgatcttttcctagtgagaggaggaatgagg
agtgtggagttcaaggttgttgagactgatcctcctgagtattgtgtggttgcttcagac
actgaaattttctgcgagggagaacctgttagaagggacgatgaggaaagattagatgag
gtagggtatgatgatattggtggagttaggaaacagatggctcagattcgcgaattggtt
gagctgcctctgaggcatcctcagctgtttaaatcaataggtgtcaaaccaccaaagggt
attctgctctatggtcctcctggaactggaaagactctaattgcaagagctgttgctaat
gaaactggggccttctttttctgtatcaatggaccagaaatcatgtccaagatggctgga
gagagtgagagcaacctcaggaaagcttttgaggaagcagagaagaatgcaccatcaatc
atatttattgatgagattgattccattgctcccaagagagagaagactaatggagaaatt
gagaggaggattgtttcccagctcttgacacttatggatggactaaagtcccgagcacat
gtaattgtaatggcggctactaatcgtccaaacagtattgacccggctcttagaaggttt
ggaagatttgatagggaaatagatattggtgttccagatgaagttgggcgccttgaggtc
ctccacattcataccaagaacatgaagcttgctgaagatgtcgatttagaaagggttgcc
aaggacactcacggttatgttggggctgatctagctgctttatcaactgaggctgcactt
caatgcatccgagaaaagatggatgtgattgacttggaagatgagacaatagatgctgag
gtacttaactcaatggcggttacaaatgagcacttccaaactgctcttggaacaagcaac
ccatctgctcttcgtgagacggttgttgaagtgcccaatgtcacttgggatgcaattgga
ggtctggaaaatgttaagagagaacttcaagagactgttcaatatcctgttgagcacccg
gagaaatttgagaaattcggaatgtcaccctcaaagggagttcttttctatggccctcct
ggatgcggtaaaactcttctggccaaggctattgccaatgagtgtcaggcaaacttcatc
agtatcaagggacctgaattgctaaccatgtggtttggagagagtgaggccaatgtcagg
gaaatatttgacaaggctcgtgcatcggctccatgtgtcctcttcttcgatgagcttgat
tccattgctactaaaagaggtagtagtgcaggtgattctggaggtgctgatagggttttg
aaccaactccttacagaaatggatggagtgtctgccaagaaaactgtgttcattattggg
gcaaccaacagacctgacattatagaccctgcacttcttcgaccaggacgtctggatcag
ttgctttacatccctctccctgatgaggaatctcgctatcaaatattcaagtcttgcttg
aggaaatctccggtttccaaatatgtggacctcagtgctcttgccaagcacacaccagga
tttagtggtgctgatatcacagaaatatgccagcgtgcttgcaaatatgccattagagac
aacattgagaaagatatcgagagggagaggaggagaagtgagaatcctgagattatggaa
gatgatgagaatgaagtagctgagattactgcagctcattttgaggaatcgatgaagtat
gctcgcaggagcgtcagtgatgctgatatcctcaagtaccaggcatttgcgactacattg
caccaggcaagagggtttggagcagatgagttcaggtttcccagtggttcgggtgctgct
attggatctgatccttttgcaactactaacgctggtgaagctgatgaagatctttatgat
tag
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integrated database retrieval system
