Rosa chinensis (China rose): 112169372
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Entry
112169372 CDS
T06020
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
112169372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112169372
03009 Ribosome biogenesis [BR:
rcn03009
]
112169372
04131 Membrane trafficking [BR:
rcn04131
]
112169372
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rcn04147
]
112169372
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
112169372
Ribosome biogenesis [BR:
rcn03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
112169372
Membrane trafficking [BR:
rcn04131
]
SNARE
SNARE associated proteins
Others
112169372
Autophagy
Aggrephagy
Other aggrephagy associated proteins
112169372
Exosome [BR:
rcn04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
112169372
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_2
AAA_5
AAA_22
AAA_14
AAA_33
TIP49
AAA_18
RNA_helicase
AAA_28
Parvo_NS1
AAA_17
nSTAND3
Mg_chelatase
IstB_IS21
AAA_7
ATPase_2
Vps4_C
AAA_24
DUF815
Zeta_toxin
ABC_tran
NB-ARC
Bac_DnaA
TsaE
Sigma54_activat
NACHT
Viral_helicase1
ResIII
SLFN-g3_helicase
UFD1
Rad17
bpMoxR
WcbI
Motif
Other DBs
NCBI-GeneID:
112169372
NCBI-ProteinID:
XP_040365157
LinkDB
All DBs
Position
6:complement(14529718..14532388)
Genome browser
AA seq
799 aa
AA seq
DB search
MSNQDEGTKKDFSTAILNRKKAPNRLIVDEAVVDDNSIIQLHPATMEKLQLFRGDTVLIK
GKKRRDTICIALADDTCEEPKVRMNKVVRNNLRVRLGDVVSIHQCADVRYGKRVHILPID
DTIEGITGNLFDAYLKPYFQETYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDT
EIFCEGEPVRREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGI
LLYGPPGTGKTLIARAVANETGAFFFCINGPEIMSKMAGESESNLRKAFEEAEKNAPSII
FIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFG
RFDREIDIGVPDEVGRLEVLRIHSKNMKLAEDVDLERVAKDTHGYVGADLAALSTEAALQ
CIREKMDVIDLEDETIDAEILNSMAVTNEHFQTALGTSNPSALRETVVEVPNVTWDAIGG
LENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFIS
IKGPELLTMWFGESEANVREIFDKARASAPCVLFFDELDSIATKRGSNVGDSGGADRVLN
QLLTEMDGVSAKKTVFIIGATNRPDIIDPALLRPGRLDQLLYIPLPDEESRYQIFKSCLR
KSPVSKYVDLTALAKHTEGFSGADITEICQRACKYAIRDNIEKDIERERRRSENPDVMEE
DKDEVSEITAAHFEESMKYARRSVSDADIRKYQAFATTLHQARGFGADEFRFPSGSGAAV
GSDPFATTTAGEADEDLYD
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaccaagatgagggaacgaagaaggacttcagcaccgccattctcaaccgcaag
aaggctccaaatcgcctcattgtcgatgaagctgtggtggatgacaactccatcatccaa
ctccacccggcgaccatggagaagctccagctctttcgtggtgacacagtcttgatcaaa
ggaaagaagagaagagacacaatctgtattgctcttgctgatgatacatgtgaggaacca
aaggtaaggatgaacaaggttgtgaggaacaaccttagggttaggcttggtgatgttgtt
tccattcaccaatgcgctgatgttaggtatggaaagcgtgtccacattctccctatagat
gacacaattgaagggatcactggaaatctgtttgatgcctacttgaagccttatttccaa
gagacctaccgcccggtgaggaaaggtgatcttttcctagtgagaggaggaatgaggagt
gtagagtttaaggttattgagactgaccctcctgagtactgtgtggttgctccggacacc
gaaatcttctgtgagggagaacctgttagaagggaggatgaggaaagattagatgaggta
gggtatgatgatgttggtggtgttaggaaacagatggctcagattcgtgaattggttgag
ctgcctctgaggcatcctcagctgtttaaatcaatcggtgtcaaaccaccaaagggtatt
cttctctatggtcctcccggaaccggcaagactttaattgcaagagctgttgctaatgaa
accggggcattctttttctgcatcaatggaccagaaatcatgtccaagatggctggagag
agtgagagcaacctcaggaaagcttttgaggaagcagagaagaatgcgccatcaatcata
tttattgatgagattgattccattgctcccaagagagagaagactcatggtgaagttgag
aggaggattgtttcccagctcttgactcttatggatggactaaagtcccgagcacatgtc
attgttatgggggctactaatcgtccaaacagtattgacccggctcttaggaggtttgga
agatttgatagggaaatagatattggtgttccagatgaagttgggcgtcttgaggtcctc
cgcattcatagcaagaacatgaagcttgccgaagatgtcgatttagaaagagttgccaag
gatactcatgggtatgttggtgctgatctagctgctttatctactgaggctgcacttcaa
tgcatccgagagaagatggatgtgattgacttggaagatgagacaatagatgctgagata
ctcaactcaatggcagtaacaaacgaacatttccagactgctcttggaacaagcaaccct
tctgctcttcgtgaaacggttgttgaagttcccaatgttacttgggatgctattggaggt
cttgaaaatgttaagagagaacttcaagagactgttcaatatcctgttgagcatccagag
aaatttgagaaattcggtatgtcaccctcaaagggagttcttttctatggtcctcctgga
tgcggtaaaactcttctggccaaggctatagctaatgagtgtcaggctaacttcatcagt
atcaagggacctgagttgctcaccatgtggtttggagagagtgaggccaatgtaagagaa
atttttgacaaggctcgtgcatctgctccatgtgtcctcttttttgatgagctcgattcc
attgctactaaaagaggtagtaatgtaggtgattctggaggtgctgatagggttttgaac
caactccttactgaaatggatggagtgtctgccaagaaaactgttttcattattggggcc
accaacagacctgacattatagaccctgcacttcttcgtccaggacgtctggatcaattg
ctttacattcctctccctgatgaagaatcccgctatcagatattcaagtcttgcttgagg
aagtctcctgtttccaagtatgtggacctcacagctcttgccaagcacacagaaggtttc
agtggtgctgatatcactgaaatatgccagcgtgcttgcaaatatgccatcagagacaac
attgagaaagatattgagagggagaggaggagaagtgagaatcctgatgttatggaggag
gataaagatgaagtatcagagatcaccgcagctcattttgaggaatcaatgaagtatgct
cgtaggagtgttagtgatgctgatatccgcaagtaccaggcatttgcaaccacattgcac
caggcgagagggtttggagcagatgagttcaggttccccagtggctccggcgctgctgtt
ggttctgatccttttgcaactactactgctggtgaagctgatgaagacctttatgattag
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