KEGG   Rosa chinensis (China rose): 112170209
Entry
112170209         CDS       T06020                                 
Name
(RefSeq) histone deacetylase 19 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
rcn  Rosa chinensis (China rose)
Pathway
rcn03082  ATP-dependent chromatin remodeling
rcn03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:rcn00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    112170209
   03083 Polycomb repressive complex
    112170209
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rcn03036]
    112170209
Enzymes [BR:rcn01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     112170209
Chromosome and associated proteins [BR:rcn03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     112170209
   HDAC complexes
    Sin3A-HDAC complex
     112170209
    BRAF-HDAC complex
     112170209
    REST complex
     112170209
    SHIP complex
     112170209
    MiDAC complex
     112170209
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     112170209
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    112170209
  Chromatin remodeling factors
   NuRD complex
    112170209
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 112170209
NCBI-ProteinID: XP_024163177
LinkDB
Position
6:45074441..45078362
AA seq 492 aa
MDTGGNSLASGPDGVKRKVSYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQ
VLKPYPARDRDLCRFHADDYVAFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLYSFCQT
YAGGSVGGAVKLNHGICDISINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLY
VDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYGKGKYYSLNVPLDDGI
DDESYHYLFKPLIGKVMEIFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRYMRSFN
VPLLLLGGGGYTIRNVARCWCYETGVALGAEIEDKMPQHEYYEYFGPDYTLHVAPSNMEN
KNSHQLLEEIRSKLLENLSRLQHAPSVQFHERPPENELPEEDEDQDDRDERWDADSDMEL
DDRPIAARRVKKEIVEPEVKDPKGAVENSRGYDAGLDEITTSAKALDMGSGSMEEPSVKV
EQESLNKPADQM
NT seq 1479 nt   +upstreamnt  +downstreamnt
atggacaccggcggcaactcgctggcgtcgggtcccgacggcgtgaagcgcaaagtgagc
tacttctacgacccggaagtgggaaattactattatgggcagggccatccgatgaagccc
caccgcatcagaatgacccacgcccttttagcccattacggtcttctccagcacatgcag
gtcctcaaaccctacccggcccgggaccgggacctctgccgcttccacgccgacgactac
gtggcgtttctccggagcattacccccgaaacgcagcaggaccagctgaggcagctcaag
aggttcaatgtgggagaggattgccctgtgtttgatgggttgtactcgttttgtcagact
tatgccggtgggtctgttggtggggctgtcaagctgaatcatgggatttgcgacatttcg
attaattgggctggggggttgcaccatgctaagaagtgtgaagcttctgggttttgttat
gtcaatgacattgtgctcgcaatcttggagctgcttaaacaacacgagagagttttgtat
gtggacattgatatccaccacggggacggtgttgaggaggcgttttacactacagacagg
gtcatgacggtttcgtttcataaatttggagactattttccagggacgggggacattcgc
gatattgggtacgggaaagggaagtattactccctcaatgttccgttagatgatggaatt
gatgatgagagctaccattacttgttcaaacccctcattgggaaggttatggagatattt
aggcctggtgctgttgttctacagtgtggtgctgattccttatctggggataggcttggt
tgctttaatctttccatcaagggtcatgctgaatgtgttagatacatgagatccttcaat
gtcccgcttttgcttctaggcggtggcgggtataccattcgcaatgttgctcgttgctgg
tgctacgagactggtgttgcacttggagcagaaattgaggacaaaatgccacagcatgag
tattatgagtattttggtccagactatactcttcatgttgcccctagtaatatggaaaac
aagaattctcatcagttactggaagaaatacgatcgaaacttcttgaaaatctctccagg
cttcagcatgcacctagtgtccaatttcatgaaaggcctcctgaaaatgagcttccagag
gaagatgaggatcaggatgacagagacgagagatgggatgccgattctgatatggagctt
gatgacagacctattgcagcaagaagagtaaagaaagagattgttgaacctgaggttaaa
gatccgaaaggagctgtagagaattctagaggctatgatgcaggactggatgaaattaca
acaagcgcaaaggctttggatatgggctctgggtctatggaggaaccaagtgtaaaagtt
gaacaagagtctctgaataagcctgcagatcagatgtaa

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