Rosa chinensis (China rose): 112170209
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Entry
112170209 CDS
T06020
Name
(RefSeq) histone deacetylase 19 isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03082
ATP-dependent chromatin remodeling
rcn03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112170209
03083 Polycomb repressive complex
112170209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rcn03036
]
112170209
Enzymes [BR:
rcn01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
112170209
Chromosome and associated proteins [BR:
rcn03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
112170209
HDAC complexes
Sin3A-HDAC complex
112170209
BRAF-HDAC complex
112170209
REST complex
112170209
SHIP complex
112170209
MiDAC complex
112170209
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
112170209
Heterochromatin formation proteins
Other heterochromatin formation proteins
112170209
Chromatin remodeling factors
NuRD complex
112170209
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
112170209
NCBI-ProteinID:
XP_024163177
LinkDB
All DBs
Position
6:45074441..45078362
Genome browser
AA seq
492 aa
AA seq
DB search
MDTGGNSLASGPDGVKRKVSYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQ
VLKPYPARDRDLCRFHADDYVAFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLYSFCQT
YAGGSVGGAVKLNHGICDISINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLY
VDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYGKGKYYSLNVPLDDGI
DDESYHYLFKPLIGKVMEIFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRYMRSFN
VPLLLLGGGGYTIRNVARCWCYETGVALGAEIEDKMPQHEYYEYFGPDYTLHVAPSNMEN
KNSHQLLEEIRSKLLENLSRLQHAPSVQFHERPPENELPEEDEDQDDRDERWDADSDMEL
DDRPIAARRVKKEIVEPEVKDPKGAVENSRGYDAGLDEITTSAKALDMGSGSMEEPSVKV
EQESLNKPADQM
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggacaccggcggcaactcgctggcgtcgggtcccgacggcgtgaagcgcaaagtgagc
tacttctacgacccggaagtgggaaattactattatgggcagggccatccgatgaagccc
caccgcatcagaatgacccacgcccttttagcccattacggtcttctccagcacatgcag
gtcctcaaaccctacccggcccgggaccgggacctctgccgcttccacgccgacgactac
gtggcgtttctccggagcattacccccgaaacgcagcaggaccagctgaggcagctcaag
aggttcaatgtgggagaggattgccctgtgtttgatgggttgtactcgttttgtcagact
tatgccggtgggtctgttggtggggctgtcaagctgaatcatgggatttgcgacatttcg
attaattgggctggggggttgcaccatgctaagaagtgtgaagcttctgggttttgttat
gtcaatgacattgtgctcgcaatcttggagctgcttaaacaacacgagagagttttgtat
gtggacattgatatccaccacggggacggtgttgaggaggcgttttacactacagacagg
gtcatgacggtttcgtttcataaatttggagactattttccagggacgggggacattcgc
gatattgggtacgggaaagggaagtattactccctcaatgttccgttagatgatggaatt
gatgatgagagctaccattacttgttcaaacccctcattgggaaggttatggagatattt
aggcctggtgctgttgttctacagtgtggtgctgattccttatctggggataggcttggt
tgctttaatctttccatcaagggtcatgctgaatgtgttagatacatgagatccttcaat
gtcccgcttttgcttctaggcggtggcgggtataccattcgcaatgttgctcgttgctgg
tgctacgagactggtgttgcacttggagcagaaattgaggacaaaatgccacagcatgag
tattatgagtattttggtccagactatactcttcatgttgcccctagtaatatggaaaac
aagaattctcatcagttactggaagaaatacgatcgaaacttcttgaaaatctctccagg
cttcagcatgcacctagtgtccaatttcatgaaaggcctcctgaaaatgagcttccagag
gaagatgaggatcaggatgacagagacgagagatgggatgccgattctgatatggagctt
gatgacagacctattgcagcaagaagagtaaagaaagagattgttgaacctgaggttaaa
gatccgaaaggagctgtagagaattctagaggctatgatgcaggactggatgaaattaca
acaagcgcaaaggctttggatatgggctctgggtctatggaggaaccaagtgtaaaagtt
gaacaagagtctctgaataagcctgcagatcagatgtaa
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