Rosa chinensis (China rose): 112197556
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Entry
112197556 CDS
T06020
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
112197556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112197556
03009 Ribosome biogenesis [BR:
rcn03009
]
112197556
04131 Membrane trafficking [BR:
rcn04131
]
112197556
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rcn04147
]
112197556
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
112197556
Ribosome biogenesis [BR:
rcn03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
112197556
Membrane trafficking [BR:
rcn04131
]
SNARE
SNARE associated proteins
Others
112197556
Autophagy
Aggrephagy
Other aggrephagy associated proteins
112197556
Exosome [BR:
rcn04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
112197556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
RuvB_N
AAA_16
AAA_2
AAA_14
AAA_5
AAA_22
AAA_33
TIP49
RNA_helicase
AAA_18
nSTAND3
AAA_28
AAA_17
Mg_chelatase
AAA_25
Parvo_NS1
IstB_IS21
ATPase_2
NACHT
ABC_tran
Zeta_toxin
AAA_7
AAA_24
DUF815
Viral_helicase1
TsaE
NB-ARC
Bac_DnaA
AAA_3
Sigma54_activ_2
SLFN-g3_helicase
Rad17
Cytidylate_kin2
Vps4_C
ATP-synt_ab
Zot
Motif
Other DBs
NCBI-GeneID:
112197556
NCBI-ProteinID:
XP_040374708
LinkDB
All DBs
Position
4:47282907..47285015
Genome browser
AA seq
653 aa
AA seq
DB search
MALQSALPFEMYNQFADQSSNSNKATKRDFSNVHGSDDGDGIGDAILVNAMKRIKLSSDN
GDSSQMKTKKKEIGYEDVGGVRKQMAQIRELVELPLKQPKLFKFIGVKPPKGILLYGPPG
SGKTLIARALANETGALFLCINGPEIMSKMAGESESNLRKVFEEAEKNAPSIVFIDEIDS
IAPKREKSNGEVERRIVSQLLTLMDGMKSKGRVIVIGATNRPNSIDPALRRCGRFDREID
IGVPDEAGRLEVLRIHTKNMKLGEDVELEKIAKETHGYVGADLAALCTEAALQCIRENLD
EIDWEDQETLDAAMLGSMKVGNEHFRIALRASNPSALRETAVEVPNVTWDAIGGLEKVKR
ELQETVQYPVERPEKFDKYGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL
LTSGFGESEANVREIFDKARGSAPCVLFFDELDSIATQRSSNAGGGGAADRVLNQLLTEM
DGLSAKKTVFVIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRCEIFKACLRKSPVSK
DVNIRALAKNTRGFSGADITEICQRACKYAIRENIGNDIKREMSKSENCEAMEEDEVAEI
TAAHFVESMKYARRSVGDSDIRKYKAYAQTLRQSRGFGTDQFKIAGSGSHAAV
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggctctccaatctgctctgccatttgaaatgtacaaccaattcgccgatcaatcttcc
aattccaataaggccacaaagagggacttcagcaatgtccacggttccgatgatggcgat
ggcattggcgacgcaatcttggtcaatgcaatgaaaagaatcaagctctcatcagataat
ggtgactcatctcagatgaagacgaagaagaaggaaattgggtatgaagacgtaggtggt
gtgaggaagcagatggctcagattcgtgagttagtggagcttccattgaagcaacccaag
ttgtttaagttcattggagtgaagcctccaaagggtattcttctatacggcccccctggc
tcgggcaagactctgattgcccgagccctcgcgaacgagacgggggccttgtttttgtgc
attaacgggccggagatcatgtcgaaaatggctggggagagtgagagtaatctaaggaag
gttttcgaggaagcggagaagaatgcaccgtctattgtgtttatagatgagattgactca
attgctccgaagagagagaagagtaatggggaagttgagaggaggattgtttcacagctc
ttgacactcatggatggtatgaagtcgaaagggcgtgtgattgttattggggccacgaat
cggcctaatagtattgacccggctcttagaaggtgtggaagatttgatagggagatagat
attggtgttcctgatgaggccgggcggcttgaggtgcttcgaatccataccaagaacatg
aagcttggtgaggatgtggagttggaaaagatagccaaggagacacatgggtatgttggg
gcagatttagctgcattgtgcactgaggctgcgcttcaatgcataagagagaatttggat
gaaattgactgggaagatcaggagacattagatgctgcgatgcttggctctatgaaagtt
ggaaatgagcactttcggattgctttgcgagcaagcaacccttctgctcttcgcgaaacg
gctgtggaggtgccgaatgtgacttgggatgctatcgggggtctggagaaagtgaagagg
gaacttcaggagactgttcagtatccagttgagcgtcctgagaagtttgataaatatggg
atgtcaccctcaaagggggttcttttctatggccctcctggttgtggtaagacccttttg
gccaaggctattgccaatgaatgtcaggcaaattttattagtatcaaggggcctgagttg
cttactagtgggtttggagagagtgaggcgaatgtgagggaaattttcgacaaggctaga
gggtctgctccctgtgtcctcttttttgatgaactcgattccattgctactcagagaagt
agtaatgctggaggtggtggtgcagctgatagggttttgaaccaactccttacggaaatg
gatggattgtctgctaagaaaactgtctttgttatcggggccaccaatagacctgacatt
atagaccctgcacttctgcgtccaggacgtctggaccaattgatttacatccctctccct
gatgaggaatcccgctgtgaaatattcaaggcttgcttgaggaagtctccagtttccaaa
gatgtgaacataagagctcttgcaaagaacactagaggatttagtggtgctgatatcaca
gaaatatgccagcgtgcttgcaaatatgccattagagagaacattgggaatgatatcaag
agggagatgagcaaaagtgagaattgcgaagctatggaggaggatgaagtggcagagatc
acggcagctcacttcgtggagtcgatgaagtatgctcgtagaagtgttggtgattccgat
atccgcaaatacaaggcatacgctcagacattgcggcagtctagagggtttggaacagac
cagttcaaaattgcagggagcggttctcatgctgctgtctga
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