KEGG   Rosa chinensis (China rose): 112202386
Entry
112202386         CDS       T06020                                 
Name
(RefSeq) protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 isoform X1
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
rcn  Rosa chinensis (China rose)
Pathway
rcn03250  Viral life cycle - HIV-1
rcn04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:rcn00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    112202386
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    112202386
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rcn04131]
    112202386
   03400 DNA repair and recombination proteins [BR:rcn03400]
    112202386
Membrane trafficking [BR:rcn04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    112202386
DNA repair and recombination proteins [BR:rcn03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    112202386
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 AAA_16 AAA_5 RuvB_N TIP49 AAA_22 AAA_14 DUF815 AAA_33 AAA_17 RNA_helicase AAA_2 IstB_IS21 AAA_24 AAA_18 Parvo_NS1 Mg_chelatase AAA_25 nSTAND3 AAA_7 PhoH NACHT USP8_dimer AAA_28 Torsin bpMoxR
Other DBs
NCBI-GeneID: 112202386
NCBI-ProteinID: XP_024199152
LinkDB
Position
5:complement(39356394..39361590)
AA seq 433 aa
MYSNFKEQAIEYVKQAVHEDNNGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFT
EYLRRAEEIRAVLDDGGPGPASNGDAAVATRPKTKPKDGEGGDGEDPEQAKLRAGLNSAI
IREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLA
KAVATEADSTFFSISSSDLVSKWMGESEKLVSNLFQMARDSAPSIIFVDEIDSLCGTRGE
GNESEASRRIKTELLVQMQGVGTNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDVK
ARQHMFKVHLGDTPHNLTESDFESLAFKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFK
NSDNMFIPCGPKQPGAVQITMQELAAQGLASQILPPPITKTDFDKVLARQRPTVSKGDLE
VHERFTKEFGEEG
NT seq 1302 nt   +upstreamnt  +downstreamnt
atgtatagcaatttcaaagagcaggctatagagtacgtgaagcaagccgtccatgaagac
aacaatggaaactacgcaaaggcctttcctttgtacatgaacgctctcgagtacttcaag
acccacctcaagtacgagaagaaccctaagatcaaggaggctattacccagaaattcacc
gagtacttgcgccgggccgaggagattcgggccgttttggacgacggcgggcccggcccg
gcctccaacggcgacgcggcggtcgcgaccaggcccaagaccaagcccaaggacggggaa
ggcggcgacggggaggatccggagcaggccaagctccgggctgggcttaattcggcgatt
attagggaaaagcccaatgtcaagtggaatgatgtggcgggtctcgagagcgccaagcag
gctttgcaagaggccgtgatattgcccgtcaagttccctcagttctttactggcaagaga
cgaccatggagggcttttctattgtatggtcctcctggaactggaaagtcttacttggcc
aaggctgttgcaactgaagctgactccacatttttcagtatttcctcttcagacctggtt
tcaaagtggatgggtgagagtgagaagctagtttcaaaccttttccaaatggctcgagat
agtgccccatccatcatctttgttgatgaaatagattccttatgtgggacgcgtggagaa
ggcaatgagagtgaagcttctagacgaatcaagacagaacttcttgtgcagatgcagggt
gtgggaaccaatgaccaaaaagttcttgttcttgcagcgacaaatactccctatgcatta
gaccaggccattcgaagacgttttgacaagcgtatttacattccccttccagatgtaaag
gctcgacagcatatgttcaaagtccacttgggagatactcctcacaacttgacagaaagt
gattttgaaagcttagcgttcaaaactgagggattttcgggttcagatatttctgtttgt
gtcaaggatgttctttttgaacctgtacgcaaaacacaagatgccatgttctttttcaag
aattctgataatatgttcataccttgtggaccaaagcaaccgggtgcggtccaaatcacc
atgcaggagttggcagctcaaggactagcttcacagatccttccacctcccatcacaaaa
acagattttgataaggtacttgctagacagaggcctactgtgagcaaaggggaccttgaa
gtccatgaaaggttcacgaaagaatttggagaggaagggtga

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