Ricinus communis (castor bean): 8266927
Help
Entry
8266927 CDS
T01087
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8266927
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcu03041
]
8266927
Enzymes [BR:
rcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
8266927
Spliceosome [BR:
rcu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
8266927
Complex C
U4/U6.U5 tri-SnRNP related factors
8266927
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
PWI
AAA_22
DEAD
AAA_19
AAA_30
nSTAND3
SRP54
ABC_tran
AAA_16
Motif
Other DBs
NCBI-GeneID:
8266927
NCBI-ProteinID:
XP_048232455
LinkDB
All DBs
Position
7:17871641..17894637
Genome browser
AA seq
1053 aa
AA seq
DB search
MGDSDLKTWVSDKLMSILGYSQSTVVQYIIGISKQANSPADVQAKLSEFGFSTSAETRSF
SEELFSRVPRKQSGLNIYQKQEREAAMLARKQLTYTLLDADDDDDANGSDASAYGNQSST
ITGFEPGRAESHKKRFRKKIESEEDEDKELVSPVEKERQVKRRISQDEEDDSESEEERLQ
DQREREQLERNLRERDAAGTRKLTEPKISKKEAEEAVRRSHVLEEDGIGTLRKVSRQEYL
KKREQKKLEELRDDIEDEQYLFDGVKLTEAEVREIRYKKELYELIKKKSEDADDTNEYRM
PEAYDQEGGVSQEKRFAAALQRYRDPNAGDKMNPFAEQEAWEDYQIGKATLKFGSKNKKQ
ISDDYQFVFEDQIEFIKASVMDGDKFDDQLPAESLDNSMEKSAFEKIQEDRKSLPIYKYR
DELLAAIEKFQVLVIVGETGSGKTTQIPQYLHEAGYTKRGKVGCTQPRRVAAMSVAARVS
QEMGVKLGHEVGYSIRFEDCTSEKTLLKYMTDGMLLREFLGEPDLASYSVVMVDEAHERT
LSTDILFGLVKDIARFRPELKLLISSATLDAAKFSDYFDSAPIFKIPGRRFPVEIHYTKA
PEADYLDAAIVTALQIHVTQSPGDILVFFTGQEEIETAEEILKHRTRGLGTKIAELIICP
IYANLPTELQSKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGM
ESLLVTPISKASAMQRAGRSGRTGPGKCFRLYTAYNYNHDLDENTVPEIQRTNLANVVLS
LKSLGIHDLLNFDFMDPPPSEALLKALELLFALSALNKHGELTKVGRRMAEFPLDPMLSK
MIVASDKYKCSDEIISIAAMLSIGNSIFYRPKDKQVHADNARMNFHTGNVGDHVALLKVY
DSWKETNFSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIEMTSNPNDLDAIKKSITS
GFFPHSARLQKNGSYRTVKHPQTVHIHPSSGLSQVLPRWVIYHELVLTTKEYMRQVTELK
PEWLVEIAPHYYQMKDVEDPGSKKMPRGEGRPS
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atgggtgatagtgatttaaaaacatgggtatctgataagttgatgtcaattcttggctat
tctcagagcacagttgttcagtacataattggcatatctaagcaagcaaattcaccagct
gatgtgcaggccaagctatccgagtttggtttttcaacatcagctgagacccggtctttc
tctgaggaacttttttctagagtaccccggaaacaatctggtttaaatatttatcagaaa
caagaaagggaagctgctatgttggcaaggaaacaattgacttatacacttttggatgct
gatgatgatgatgatgccaatggtagtgatgccagtgcttatggtaaccaatcttcaact
ataactggctttgagcctggaagagccgagtcacataagaagcgattcaggaagaagatt
gaaagtgaagaggatgaagacaaagagctggtctcacctgtggaaaaggagagacaggtt
aaacggcggatttcccaagatgaagaggatgattcagagtcggaggaggaaagattgcag
gatcaaagagaaagggagcaattagaacgaaatttaagagaacgtgatgctgctgggact
cgaaagctgacagagccaaagatatcaaaaaaggaggcagaagaggcagtgcgaagatca
catgttttggaggaagatggaattggcactttgagaaaagtgtcacgtcaagaatatctt
aagaaaagagagcaaaagaaattggaagaactcagggatgacatagaagatgagcaatat
ctatttgatggtgtgaaactgactgaagcagaagtacgtgaaataagatacaagaaggaa
ttatacgagctcataaagaagaagtcagaagatgcagatgataccaatgagtacagaatg
ccagaagcatatgatcaggaagggggcgttagtcaggagaagagatttgctgcagctttg
cagcgctatagggatcccaatgccggtgacaaaatgaacccctttgcagaacaggaggct
tgggaagattatcagattggaaaagcaactttaaagttcgggtcaaagaacaaaaagcag
atttctgatgattatcagtttgtgtttgaggaccagattgagtttatcaaagcatcagtg
atggacggtgacaagtttgatgatcaattacctgctgagtccctggacaactctatggaa
aaatcagctttcgagaagattcaggaggatcgaaaaagtttgcctatctacaaataccgg
gatgaactacttgctgctattgagaagtttcaggttcttgttattgtgggagaaactggt
tcaggaaagaccacacagataccccagtatcttcatgaagctgggtacaccaagcgtgga
aaggttggctgtacacagccaaggcgtgttgctgctatgagtgttgctgcaagggtttct
caagaaatgggtgtcaaacttgggcatgaggttggctactccattcgttttgaagactgc
acatcagaaaagacacttctgaaatatatgactgatggaatgctgttgcgagaattcctt
ggtgagccagatttggcaagctacagtgtagtgatggtggatgaggcacatgaaagaaca
ttgtcaactgacatactgtttggactagtaaaggatatagcccggttccgtccagagttg
aagttgctgatttcaagtgcaacacttgatgctgcaaaattcagcgattactttgattca
gctccaattttcaaaattcctgggaggaggtttcctgttgaaatacactatactaaagct
ccagaagctgattatctagatgcagctattgtaactgcgcttcaaatccatgtgacacag
tcacctggagatattttagttttctttacaggtcaggaggaaatagagacagctgaggaa
attttgaagcatagaacaagaggtttggggaccaaaattgcagagcttattatctgcccg
atatatgcaaatttaccaactgagcttcaatccaaaatatttgagcctactccagaaggg
gctcggaaggttgtccttgcaacaaatattgccgagacatcattaacaattgatgggata
aagtatgttattgatcctggcttttgcaaaatgaaatcgtataacccaaggactggaatg
gaatctttgctagtaacacctatttcaaaagcttcagccatgcaacgtgctggtcgttct
ggacgaacaggtccagggaagtgtttccggttgtatactgcctacaattacaatcatgac
ttggatgagaatacggtaccagaaatacaaagaacaaatctggctaatgttgtgctatca
ttgaagagtcttggaattcatgacttgttaaattttgattttatggatcctccaccttct
gaggcattactaaaagccttggaacttctgtttgcactaagtgcactgaataaacatggt
gagctgaccaaagttggtagaaggatggctgagttcccacttgatcccatgctatctaaa
atgattgttgcttctgacaagtacaagtgttcagatgagataatttctattgctgctatg
ctttctattggaaattcaatattctatcgtccaaaggacaaacaagttcatgctgacaat
gccagaatgaatttccacacaggaaatgtgggggaccatgtagctcttctcaaggtgtat
gattcttggaaggaaactaacttctcaacgcaatggtgttatgaaaattatattcaggtg
aggagtatgaaacgagctagagatatacgagatcagttggaaggcctactggaacgggtt
gaaattgagatgacgtccaatcccaatgacttagatgccataaagaagtccataacatct
ggctttttccctcattctgcaaggctacagaagaatgggtcttatagaacagtgaaacat
cctcagacagttcatatacaccccagctcagggttgtctcaggtgctcccaaggtgggtt
atataccatgagttggttcttacaaccaaggagtacatgaggcaggtaactgagctgaaa
ccggagtggctggtagagatagccccccattattaccagatgaaggatgttgaagatccg
gggtcaaagaaaatgccacgaggggaaggacgtccatcatag
DBGET
integrated database retrieval system
