Ricinus communis (castor bean): 8272297 Help Entry 8272297           CDS       T01087                                  Name (RefSeq) THO complex subunit 2   KO K12879   THO complex subunit 2 Organism rcu  Ricinus communis (castor bean) Pathway rcu03013   Nucleocytoplasmic transport rcu03040   Spliceosome Brite KEGG Orthology (KO) [BR:rcu00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     8272297   09122 Translation    03013 Nucleocytoplasmic transport     8272297  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:rcu03019]     8272297    03041 Spliceosome [BR:rcu03041]     8272297 Messenger RNA biogenesis [BR:rcu03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     TREX complex      8272297 Spliceosome [BR:rcu03041]  Complex C   Other components    EJC/TREX     8272297  Other splicing related proteins   Spliceosome associated proteins (SAPs)    TREX complex     8272297 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Tho2 THOC2_N Thoc2 TPR_MLP1_2 Motif Other DBs NCBI-GeneID:  8272297 NCBI-ProteinID:  XP_015579890 LinkDB All DBs Position 5:complement(11227868..11250383) Genome browser AA seq 1867 aa AA seqDB search MSLPPIDCIYVREDYIREWKSGSSSFRVPDPVPMLRFLYELCWTMVRGELPYLKCKAALE SVEYTESVSARVLASTFADIVTQMAQDLTMPGEYRARLIKLAKWLVESSLVPLRFFQERC EEEFLWEAEMIKIKAQDLKGKEVRVNTRLLYQQTKFNLVREESEGYAKLVTLLCQGYDNV NSNASAATIGIIKSLIGHFDLDPNRVFDIVLECFELQPDNNIFLDLIPIFPKSHASQILG FKFQYYQRLEVNSPVPFGLYKLTALLVKEEFIDLDSIYSHLLPRDDEAFEHYVAFSSKRL DEANKIGKINLAATGKDLMEDEKQGDVTVDLFAALDMETDAVAERLSELENSQTLGLLTG FLSVDDWFHAHILFDRLSLLNPVGHVQICKGLFRLIEKSISAAYDIIHQTHVQNLESSSG VGCSSMDTSIALAHRSVIDLPKELFQMLTTVGPYLYRDTILLQKVCRVLRGYYLFALELI GGIDGGTSKESVSMGNPRVHLREAKSRVEEALGTCLLPSLQLIPANPAVGQEIWEVMSLL PYEVRYRLYGEWEKDDEQNPMVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANP MTVLRTIVHQIEAYRDMIAPVVDAFKYLTQLEYDILEYVVIERLAQGGRDKLKDDGLNLS DWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELVHQMANVQYTENL TEEQLDAMAGSETLRYQATSFGVTRNNKALIKSTNRLRDSLLPKDEPRLAIPLLLLIAQH RSVVVISAGAPYIKMVSEQFDRCHGTLLQYVEFLCSAVTPATGYAKLIPSLDDLVHLYHL DPEVAFLIYRPVMRLFKCVGNSDVFWPLDDNDAVSTVDSEQTESSGNVILDLGSSQKPIM WSDLLETVKTMLPSKAWNSLSPDLYATFWGLTLYDLYVPRDRYESEIAKQHAALKALEEL SDNSSSAISKRKKDKERIQESLDRLTSELHKHEENVASVRRRLSREKDKWLSSCPDTLKI NMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMICCCT EYEAGRLGKFLHETLKIAYYWKSDESIYERECGNMPGFAVYYRFPNSQRVTYGQFIKVHW KWSQRISRLLIQCLESTEYMEIRNALILLTKISGVFPVTKRSGINLEKRVARIKSDERED LKVLATSVASALAARKPSWVTDEEFGMGYLDIRPPAASKSVSGNISVGQNSSGLNASQGE SAGGRAVSTTTQHGDVGNSAKEHISRAKPADKQESVSYVKSDSVNQKVKGGSLVIQSDLQ SSAALVTGQAGASRSAENQKQMSESPIIIPDAPKNSAESESKASGKRAMPAGSVKTPRQD VAKDDLKSGKTVGRVPVASSSDKDMPSHLSESRLGNGTNVSSTGTSNGNAFPASTKGFNS STRTSDGHGSELKADGAAKSVVKDDATEVGDVQKPPSRVVHSPRHDGSFASSSKSSDKLQ KRASPGDDPDRLSKRRKGDTELRDLDGDIRFSDRERPMDSRLVDLDKIGSDERVHRSMDK PLDRSKDKGMERYDRDHRERSERPDKSRGDDILVERPRDRSMERYGRERSVERGQERGGA DRSFDRFSDKTKDERNKDKVRYGDTSVEKLHDDRFYGQNLPPPPPLPPHVVPQSVTASRR DEDADRRIGSARHSLRLSPRHDEKERRRSEENSLVSQDDVKRGRDDNFRDRKRDEREGLA MKVEDRERDREREKVPLKDDIDVGAASKRRKLKREHMPSGEAGEYSPVAPPPPPLAISMS QSYDGRERGDRGALIQRAGYLEEPPMRIHGKEVAGKMTRRDADPMYDREWDDDKRQRGAE QKRRHRK NT seq 5604 nt NT seq  +upstreamnt  +downstreamnt atgtctctccctcctatagattgtatatacgtcagagaagattatattcgcgaatggaaa agcggtagctctagctttcgcgtccctgaccccgtccctatgcttcgattcctttacgag ctctgctggaccatggttcgaggagaactgccgtatctgaagtgtaaagcggctttagag tctgtagaatatacagagagtgtgtctgctagagtgttggcttccacttttgctgatatt gttacgcagatggctcaggatcttacaatgcctggagaataccgagctcggctcataaag ttggcaaagtggctggtggaatcttcacttgtcccattgaggttttttcaagagcgttgc gaggaggaatttctctgggaggctgagatgataaagataaaagcgcaggatttaaagggg aaagaggtcagagtaaacactcgtctactttatcagcaaacaaaatttaatcttgtcaga gaagaaagtgagggctatgccaaactggttacccttctatgtcaaggctatgacaatgta aattcaaatgcatcagcagcaacaataggcatcattaagtcattaattgggcattttgat ttagatccaaaccgtgtttttgatattgttttggagtgttttgaacttcagcctgacaac aacatttttttggacctgatccctatctttcccaagtctcatgcctcacaaattcttggt ttcaagttccaatattatcagagattggaagtaaatagtcctgtaccgtttgggctctat aagcttactgctttgctggtgaaggaagagttcattgaccttgatagcatctattctcat ctacttcctagggatgatgaggcctttgagcattatgttgctttttcttccaagcgcttg gatgaggcaaacaaaatcggaaaaataaatctggctgctactgggaaggacctcatggag gatgagaaacaaggagatgttacagtagatctttttgccgctttggatatggaaactgat gctgtagctgaaaggttatcagagcttgaaaacagtcagactctgggcctgcttactggt tttctttctgtggatgactggtttcatgctcacatattgtttgatcgtctctctctgcta aaccccgtgggacatgtgcaaatatgtaaagggttatttaggctcattgagaagtcaatc tcagcagcttatgatatcattcatcagactcacgtccaaaatttggagtcttcttcagga gttggctgtagttctatggacaccagcattgcacttgcccataggtccgtcattgatcta cccaaggagctttttcagatgctaacgactgttggaccttatctctatcgtgatacaata ttgctgcagaaggtttgtagggtattgaggggttactacttgtttgcactcgagcttatt ggtggcattgatggaggtacaagtaaggaatctgtttctatgggaaatcctcgtgttcac ctgagagaagctaagtcaagggtagaggaagcattggggacatgtctacttccttctctg cagttaatacctgcaaacccagcagttgggcaggagatatgggaagtgatgagtctcctt ccatatgaggtgcggtatcgtttatatggtgaatgggagaaagatgatgaacagaatcca atggttttggctgcaaggcaaacagcaaaactggacaccagaaggatactgaagaggctt gcaaaggaaaatttgaagcagctgggacggatggttgcaaaacttgctcatgcaaatcca atgactgtacttcgaactattgttcaccagattgaggcatatagggatatgattgccccc gttgtagatgctttcaagtatttgacacagcttgagtatgacatcttggaatatgttgtg attgagcgcctggctcaaggaggtcgtgataagctgaaggatgatgggcttaatttgtca gattggcttcaatcattggcttcattttggggtcacctgtgcaagaagtatccatctatg gaactgagaggcctttttcagtatcttgtcaaccagcttaaaaagggtcagggaattgag cttgtacttctacaggagcttgttcatcaaatggctaatgttcagtacacggagaacctt acagaggaacaattagatgcgatggcagggagtgagacactccgttatcaggctacttct tttggagttacacgaaataacaaggctttaatcaaatctactaacaggctaagggactcc ttgcttcctaaggatgaaccgaggctggcgattcctcttttgttacttattgctcaacac cgttctgtggttgtcattagtgcaggggcaccttacattaaaatggttagtgagcagttc gatagatgccatggaactcttcttcaatatgtagaattcctttgcagtgcagttacacca gccactggttatgcgaagctgattccatctctcgatgatcttgttcacctttaccacctt gatccagaggttgcttttttaatttaccgccctgtgatgaggctcttcaagtgtgtggga aattctgatgttttctggcccctggatgacaatgatgctgtgagcactgtagattctgaa caaacagaaagttctggcaatgtgattctggatcttggctcttctcagaagcctataatg tggtcagatcttcttgagactgtgaagacaatgttgccatcaaaagcctggaatagcctg tcacctgatctctatgcaacattttggggcctcacgttgtatgatctgtatgttcctaga gatcgttatgagtctgaaattgcgaagcagcatgcagctcttaaagcattggaagagctt tctgataattcaagttctgcaatcagcaaaaggaagaaagacaaggaaaggatccaagaa tctttagatcgtttgactagtgaactccataagcatgaagaaaatgttgcttcagttcgc agacgactttctcgtgaaaaggataaatggttgagttcctgccccgatactctgaaaatc aacatggagtttcttcagcgctgtattttcccacgttgtactttcagtatgccggatgct gtttattgtgctatgtttgtgcatactctgcattcgctggggaccccatttttcaacaca gtaaaccacattgatgttctgatatgcaaaactttgcagcctatgatttgctgttgcact gaatatgaagcaggtagacttgggaaatttttgcacgagacattaaagattgcttactac tggaagagtgatgaatcaatttatgaacgtgagtgtgggaacatgccaggctttgctgtg tattatagatttccaaacagccaacgcgttacatatggccagttcattaaggtacactgg aaatggagtcaaagaatctcacggttgctgattcagtgcttggaatcaactgaatacatg gaaattcggaatgcacttattttgttgacaaagatttctggtgtttttccagttactaaa aggagtgggattaaccttgaaaagagggtagccagaattaaaagtgatgaaagagaggat cttaaggtgttggcaactagtgttgcttcagctttggctgctagaaagccttcttgggtc acagatgaagaatttggtatgggatatcttgacataaggcctccagctgcttcaaagtct gtgtctggtaatatatctgttggccagaatagttctggccttaatgcctctcagggcgaa tcagctggcggacgagctgttagcactacaactcaacatggagatgttgggaattcggcc aaagaacatatttctagagcaaaacctgcagataaacaagaaagtgtgtcatatgtgaaa tctgattcagtaaaccaaaaagtaaaaggtggatcactggtgattcagtcagaccttcag tcatctgctgctttagttactggacaagctggagcatcaagatcagcagagaatcaaaag caaatgagtgaatcgccaattataataccagatgccccaaaaaactctgcagagtctgag tcaaaagcttcaggcaaacgggcaatgcctgctggatcagtcaaaacgccaagacaagat gttgcaaaagatgacttaaaatcaggaaaaacagtgggcagagttcctgttgcatcctcc agtgacaaagatatgccttcccatttatcagaaagcaggctgggaaatggtaccaatgtt tcttccacaggcacttccaatggtaatgcctttccagcatcaactaaaggcttcaattca tctacacgaacctctgatggtcatggtagtgaactaaaggcagatggagcagccaaatca gtggtaaaagatgatgcaactgaagttggtgatgtccagaagcccccttctcgagttgtt cattctccaaggcacgatggttccttcgcatcatcatcaaagtctagtgataagttacaa aagagagcaagccctggggatgatcccgacagattaagcaaacgccgaaaaggtgatact gaattgagagatttagatggtgatattcgattctctgatagagagaggcctatggattct cggttagttgatcttgacaaaattggaagtgatgaacgtgtacataggagcatggataaa cctttagataggtcaaaagataaaggtatggagagatatgacagggaccatagagaaaga tcagagcgacctgataaatctcgtggagatgatattttagttgaaagaccaagggatagg tcaatggagcgatatggaagagagcgctcagttgagagagggcaagagagaggaggtgct gataggagtttcgacagattctctgacaaaacaaaagatgaaagaaacaaggataaagta cgctatggtgatacatctgtagaaaaattgcacgatgatcgattttatgggcaaaacttg cctccaccaccacccttgcctcctcatgtggttccccagtctgttactgctagtagaaga gatgaagatgctgatagaaggattggatctgcccggcattctctaaggctatctccaagg cacgatgagaaagaaagaagacgctcagaagaaaattctttggtttcacaagatgatgta aaacgcggaagagatgataattttcgtgataggaagcgagatgaacgagagggattggca atgaaggtggaggacagggagagggacagagagagagaaaaagtccctttgaaagatgac atagatgttggtgcagcctctaaaagacggaaacttaaaagagagcatatgccatcaggg gaagcgggcgagtattctccagttgctccaccacctccacctctagctatcagcatgtca caatcgtacgacggaagagaaaggggagatagaggagccttgattcagcgtgcaggttac ttggaggaacctccaatgcgaattcatggtaaagaagtagctggcaagatgactcgtcgt gatgctgatccgatgtatgaccgagaatgggatgatgataagaggcaaagaggagcagaa cagaagcggaggcacaggaaatag

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