Ricinus communis (castor bean): 8275267
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Entry
8275267 CDS
T01087
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
8275267
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rcu04131
]
8275267
Membrane trafficking [BR:
rcu04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
8275267
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
WD40
zf-RING_2
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
8275267
NCBI-ProteinID:
XP_002523748
UniProt:
B9SCM9
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Position
8:complement(15165624..15174887)
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AA seq
959 aa
AA seq
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MSPIPPENGVDGDDEREEEEEEEEDDDDVNEDEDEEEEEEEEEEPRLKYQRMGGSIPTLL
SNDAASCIAVAERMIALGTLDGTVHILDFLGNQVKEFAAHTAAVNDLSFDIEGEYIGSCS
DDGSVVIHSLFTDEKMKFDYHRPMKAIALDPEYSRKTSRRFVAGGLAGHLYFNSKKWLGY
RDQVLHSGEGPIHAVKWRTSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHL
VWQDDSLLVIGWGTSVKIASIRANEHKGTNGTYKPLPAASMNKVDIVASFQTSYYISGIA
PFGDSLVVLAYIPGEDGEKEFSSTIPSRQGNAQRPEVRIITWNNDELATDALPVHGFEHY
KAKDYSLAHSPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDAEDHITWLLQHNWHE
KALAAVEAGQARSELLDEVGSRYLDHLIVERKYAQAASLCPKLLQGSASAWERWVFHFAH
LRQLPVLVPYIPTENPRLRDTAYEVALVALATNPSFHKDLLSTVKSWPPVIYSALPVISA
IEPQLNTSSMTDALKEALAELYVIDGQYERASSLYADLMKPEIFDFVEKHNLHDAIREKV
VQLMMLDCKRAVPLLIQNRDLIPPAEVVSQLLAARNKCDSRYFLHLYLHSLFEANPHAGK
DFHDMQVELYADYDPKMLLPFLRSSQHYTLEKAYDICIKRDLLREQVFILGRMGNSKKAL
AVIINKLGDIEEAVEFVTMQHDDELWEELIRQCLNKPEMVGVLLEHTVGNLDPLYIVNMV
PNGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLLVKYYKEARRAVCLSNEGD
DARAKRDGSRDSQTTERTPNLRTMVVKSKTRGDSRCCMCFDPFSIQNVSVIVFFCCHAYH
MTCLMDSMNTVSGQRASGDASREQVLGYEYEDDDDDDDDDDEANSGSRLRCILCTTASS
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atgtctccgattccgccggagaacggcgtcgacggcgacgacgagcgtgaagaagaagaa
gaagaagaagaagacgacgacgacgtgaatgaagatgaagatgaagaagaagaagaagaa
gaagaagaagagccgaggctcaagtaccagagaatgggagggagtataccgacgctacta
tcaaatgatgcggcgtcgtgtattgcagtagcggagcgtatgatcgcgctcggtacactt
gacgggaccgttcatattcttgattttcttggtaatcaggttaaggagtttgctgctcac
actgctgcagtcaatgacctcagctttgatatagaaggtgaatacataggaagctgttca
gatgatggatctgttgtaatacatagccttttcactgatgagaaaatgaaatttgattac
catcgtccaatgaaggctattgctttggaccctgaatattcaagaaaaacatcgagaaga
tttgtagctggtggtttagcaggtcatttatattttaattcaaagaaatggttgggctac
cgtgaccaggttttgcactctggtgaaggtccaatacatgctgtaaaatggagaacaagt
cttattgcttgggctaatgatgcaggcgtgaaggtttacgatgctgccaatgatcagcgt
ataacatttattgaaagaccacggggaagtccacgccctgagcttttgctccctcactta
gtttggcaggatgattctctcttggttattggctggggaacatctgtgaaaattgcatca
ataagagcaaacgagcataaaggaaccaatgggacatacaagcctcttccagcggctagc
atgaacaaggtggatattgtggcatcttttcaaaccagctattatatttcaggaattgct
ccttttggtgattctttggttgttctagcttatattcctggagaagatggggagaaggaa
tttagcagcaccattccatcaagacagggtaatgcacagagaccagaagtacgcataatt
acatggaataatgatgaacttgcaacagatgcgctgcctgtgcatggttttgagcattac
aaggcaaaggattactcccttgctcattctcctttctcaggtagcagctacgctggtggt
caatgggctgctggtgatgaaccattgtactatattgtctccccaaaggatgtggttatt
gcaaaaccaagggatgctgaagatcatattacatggcttctacagcataattggcatgag
aaagctttagctgcagttgaagcaggtcaggctcggagtgaactccttgatgaggtagga
tctagatatcttgatcatttgattgtggaaaggaagtatgctcaagctgcatctttatgt
cctaaactgttacaaggatctgcatcagcatgggaaaggtgggttttccattttgctcat
cttcgtcagcttcctgtattggttccttacataccaacggaaaacccaagactgcgtgat
actgcttatgaggttgcacttgtagctctggcgacaaatccatcttttcacaaggatctt
ttgtcaactgttaaatcttggccacctgtaatttattctgcattacctgtcatatctgct
attgaacctcaactaaacacctcttccatgactgatgcactcaaagaggcactagcggaa
ttatatgtaattgatgggcaatatgagagagcttcttcactttatgctgatcttatgaag
ccagaaatatttgatttcgttgaaaagcacaacttacatgatgctattcgtgaaaaggtt
gtccaattgatgatgcttgattgcaagcgtgcagttcccttgttgatccaaaacagggac
ttaattcctccagctgaagttgtctcacaactgctggctgccagaaataagtgcgattcc
agatatttcttgcatttgtacctgcattcattatttgaagcaaatccacatgcaggaaaa
gattttcatgatatgcaggtagagctttatgcagattatgatccaaaaatgctacttcct
tttcttcgtagtagccaacattacacacttgagaaggcctatgacatttgcatcaagaga
gatcttttgagggagcaagttttcatacttggaagaatgggaaattcaaaaaaggcactt
gctgtcatcataaataaattaggagatattgaagaggctgtagaatttgtcactatgcag
catgatgatgaactttgggaagaattaattaggcagtgccttaacaaacctgaaatggtg
ggagtgttgctggagcatactgttggcaatcttgatcccctatatattgtaaatatggta
cctaacgggttggagattccacgactcagggatcgtctggtaaaaattatcactgattac
agaactgaaacatctcttagacatggatgtaatgacattcttaaggctgattgtgtaaac
ctcttggtcaaatactacaaggaagcaaggcgggcagtttgcttaagcaacgaaggagat
gatgcacgggcgaaaagagatggcagtagggattctcagacaactgagcgaacaccaaac
ttgaggactatggtggttaagtcaaaaaccaggggagactcgagatgttgcatgtgtttt
gatcccttctctatacaaaatgtatcagtcattgtattcttttgctgtcatgcttatcac
atgacttgcctaatggattccatgaatactgttagtggccaaagagcgagtggagacgct
tctagggagcaggtcctagggtatgagtacgaggatgatgacgatgatgatgatgatgac
gatgaggcaaattctggttctcgtttacgatgtatcttgtgtactactgcttccagttga
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