Ricinus communis (castor bean): 8276524
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Entry
8276524 CDS
T01087
Name
(RefSeq) general negative regulator of transcription subunit 3
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8276524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8276524
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
8276524
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
8276524
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
8276524
NCBI-ProteinID:
XP_002525444
UniProt:
B9SHH5
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Position
10:10075408..10084697
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AA seq
891 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDSFEAEMEGLSVKKGKTRPPRLMHLETSISRHKS
HIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVDELYSSLPLDKVES
LEELVTPALVKGAPVHSLKTSLASSSSQVLATATSLQQPATNVQEQAEDTASQDSNPDIV
ARTPPAKSSTIGSSAASTPTVNHSTPISVGLPAHTLSGASASSILPGSSSVRGALENAPV
AANPSSPASLANSVKEEENAGFPVRRPSPALVDPGLARGIGRGAIYSQPPSSIPLSSGAV
PSNGAVGAVPTASDIAKRNILSTDDRLGSGGMVQPLASPLSNRMILPQAGKVGDGTGIVD
SNNVGEAAAIGGRVFSPLVPGMQWRPGSSFQNQNEQGQFRARTEITPDQREKFLQRFQQV
QQQGPNTLLGMPPLAGGNHKQFSAQQNSLLQQFNSQSSSVSQATLGLGSQAPGINAITSA
ALQPPNTLLQQSTQQVVMSKDADIGLSKVEEQQQPQNLPDDSIAESAPMSGLSKNLMNED
ELKTPYTMDTPTGASGTLAEPVQLPRDTDLSPGQPIQSSQPSTGLGVIGRRSVSDLGAIG
DNLGGSAVNSGAMHDQLYNLQMLEAAYHRLPQPKDSERARSYTPRHPTATPPSYPQVQAP
IVNNPAFWERLTIDSYGTDTLFFAFYYQQNTHQQYLAAKELKKQSWRYHRKYNTWFQRHE
EPKIATDEYEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELLV
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgggagcaagtcgaaagctacaaggtgaaattgatcgcgttctgaagaaggttcaagaa
ggcgttgatgtttttgacagcatttggaacaaggtttatgatacggacaatgcaaatcag
aaagagaaatttgaggcagacttgaagaaagagattaaaaagctgcagagatacagggac
cagatcaaaacatggattcagtctagtgaaatcaaagataaaaaggttagtgcctcttac
gagcaggcattggtggatgctcgtaagcttattgagcgtgaaatggagagatttaagatt
tgtgagaaggaaacaaagacaaaggcattttctaaagaagggctgggccaacaacctaaa
accgacccgaaggagaaggctaaatcagagacaagggattggctgaacaatgtggtcggg
gagttggaatctcagattgatagctttgaagctgagatggaggggctatctgttaagaaa
ggaaagacaaggcctcctaggctgatgcatttagagacatctatttcccgacacaagtct
catataatgaagttagaactgatcttgaggctgctggataatgatgaattaagtcctgag
caggtcaatgatgttaaagactttctggatgactacgtggaacgtaatcaggaggatttt
gatgaattcagtgacgttgatgaactttacagctcattaccattagacaaggtggagtct
cttgaagaacttgtcacgcctgctcttgttaagggtgcaccagttcatagcttgaagact
tctttggcttcatcatcatctcaagtgcttgctactgccacttctttgcagcagccagct
actaatgttcaggagcaagccgaggatacagcttctcaggacagtaatcctgatattgtt
gcaagaacaccacctgccaaaagtagtacgattggttcatctgctgcatcaacaccaact
gtaaatcattcaactcccatttctgttggtcttccagctcatacattgtctggtgcgtca
gcttcttcaatacttccaggttcaagttctgttcgaggtgcactagaaaatgctcctgtt
gctgctaatccttcatctcctgcatcactggcaaattctgtgaaggaggaagaaaatgcc
ggttttcctgttcgtagaccatcaccagctcttgttgatcctggactagcaagaggtatt
ggtagaggtgctatctatagtcagcctccatctagtattcctcttagttctggtgcagtt
cccagcaatggagctgttggtgcagtacctacagcatctgacattgcaaaaagaaatatt
ttatcaacagatgatagacttgggagtggtggaatggtgcagcctttggcttctccatta
agtaatcgtatgatcttgccccaggccggcaaggttggtgatggaactggtatagttgat
tctaataatgttggtgaagctgccgcaataggtggaagagtcttttcccctttggtccct
ggcatgcagtggagacctggaagctccttccaaaatcagaatgaacagggacaatttcgt
gcaagaactgaaataacacctgatcaaagggagaaatttttgcaacggtttcagcaagtt
cagcaacagggtcccaacactcttcttggtatgccaccacttgctggtggaaatcataaa
cagttctctgcccagcaaaactcacttttgcagcagtttaattctcaaagctcatctgtc
tctcaagctactctgggactcggaagtcaggcgccaggtatcaatgctatcacgtctgct
gctctacagccgccaaatactctcctccaacagtctactcaacaagttgtgatgtcgaaa
gatgctgatattggcctctcgaaagttgaggagcaacagcagcctcagaatttaccggat
gattcaattgctgaatcagctcccatgtctgggctgagtaaaaatcttatgaatgaagat
gaattgaaaactccatacacaatggatactcctacaggagcatctggcactttggcagag
cctgtgcaattgcccagagatactgatctctctcctgggcagcccatacaatccagtcaa
ccttcaactggccttggtgttattggccggagaagtgtctctgaccttggtgccattggt
gataatcttggtggatctgctgtgaattctggggctatgcatgatcagttgtacaatttg
cagatgcttgaggcagcatatcacagacttccacagccgaaagactcagaacgcgccagg
agctacactccaaggcaccctacagccaccccgccaagctatcctcaagttcaggcacct
attgtaaataatcctgcattctgggaacgattaaccatcgatagttacggcactgatact
ttattctttgcattctactatcaacagaatacccatcagcaatatctggctgcaaaagag
ctaaagaaacaatcctggagatatcacagaaaatacaacacctggtttcaacgacatgag
gagcctaaaattgcaactgatgaatatgaacagggaacttatgtgtactttgattttcac
attgccaatgatgacctccaacatggatggtgccagaggatcaagactgagttcaccttt
gagtataactatcttgaagatgaactacttgtttag
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