Roseobacter denitrificans: RD1_2416
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Entry
RD1_2416 CDS
T00376
Name
(GenBank) extracellular solute-binding protein, putative
KO
K02055
putative spermidine/putrescine transport system substrate-binding protein
Organism
rde
Roseobacter denitrificans
Pathway
rde02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RD1_2416
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rde02000
]
RD1_2416
Transporters [BR:
rde02000
]
ABC transporters, prokaryotic type
Mineral and organic ion transporters
Putative spermidine/putrescine transporter
RD1_2416
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_8
SBP_bac_6
SBP_bac_1
SBP_bac_11
Motif
Other DBs
NCBI-ProteinID:
ABG31985
RoseoBase:
RD1_2416
UniProt:
Q166V8
LinkDB
All DBs
Position
complement(2304566..2305615)
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AA seq
349 aa
AA seq
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MKLTRRSVVGGLTAATALASPVILRAATRELVMTGYGNDSDAPLIAAGEELARRNPGVSL
RIIGGLSSEALAQIKAARGNSPYDLGVMGSPAIINALAEDVLVPLDFSKIPNTANVDPKF
PSYGYDVGQPIWFEGIGIAYDKTKITTPPTTWEELWSGDYTGRIGMCRPQSNLGLGVLAA
TSEAFGMPQSDMDFALNKWMELDPLVGRSPPLLQQMIERGEVDLAPLWHVNSALAANSGL
PIGYTKITGPGPLMLPTNIVQFVNTQDGTADLVHEFTDILLTPEIQSMAGSAPIYFGTVV
EGIEVPAEAAPYVPSTPEELATTTSLEWPDFAPLRRQTVESFDRMFAAT
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgaaactaaccagaagaagcgttgttggcgggctaacagccgcaaccgccttggccagc
ccggtaatcctgcgtgctgccacccgcgaattggtaatgacaggctatggtaacgattcg
gatgcgcccctgattgccgccggcgaagaacttgcccgccgcaaccccggtgtttctttg
cgcatcatcggcggcctgtcgtccgaagcgctcgctcagatcaaagcggcacggggcaat
tctccctatgacctcggcgtcatggggtcccccgcgatcatcaacgcgctggccgaagat
gtcctggtaccactggacttttcaaaaatcccgaacacggccaatgtggatccgaaattc
ccgtcctatggctatgacgtcggccagccgatctggtttgaagggatcggcatcgcctac
gacaagaccaagatcaccacgccgcccaccacatgggaagaactctggagcggcgactac
accgggcgcattggcatgtgtcgcccgcaatccaaccttggccttggggtccttgccgca
accagcgaagcctttgggatgccgcagtccgacatggactttgcgctgaacaaatggatg
gaacttgatccgctggtgggccgctcaccgccgctgctgcagcagatgatcgagcgtggc
gaagtggatctggcccccctgtggcacgtcaattccgcacttgccgcaaactccgggttg
cccatcggctacaccaagatcacggggccaggaccgctgatgttgcccacgaatatcgtg
cagtttgtcaatacgcaggacggcaccgcagaccttgtgcacgaattcaccgacattctg
ctgacgccggaaatccagtcgatggcaggcagcgcgccgatctatttcggaacggtcgtg
gaaggcatcgaggtacctgcagaggccgcgccctatgttccttcgacacccgaagaactg
gcaacgaccacctctctagaatggcctgatttcgcgcccttgcgccgccagaccgttgag
tcctttgatcgaatgttcgccgcgacatga
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