Roseobacter denitrificans: RD1_4067
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Entry
RD1_4067 CDS
T00376
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rde
Roseobacter denitrificans
Pathway
rde03030
DNA replication
rde03430
Mismatch repair
rde03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RD1_4067 (dnaE)
03430 Mismatch repair
RD1_4067 (dnaE)
03440 Homologous recombination
RD1_4067 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rde03032
]
RD1_4067 (dnaE)
03400 DNA repair and recombination proteins [BR:
rde03400
]
RD1_4067 (dnaE)
Enzymes [BR:
rde01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RD1_4067 (dnaE)
DNA replication proteins [BR:
rde03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RD1_4067 (dnaE)
DNA repair and recombination proteins [BR:
rde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RD1_4067 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
SSB
DUF883
Motif
Other DBs
NCBI-ProteinID:
ABG33511
RoseoBase:
RD1_4067
UniProt:
Q160T2
LinkDB
All DBs
Position
complement(3930970..3934521)
Genome browser
AA seq
1183 aa
AA seq
DB search
MSTHPRFIHLRTHSEYSLLEGALRLKKLPSMCRDAGMPALALTDKNNMFAALEFSVAMSG
AGVQPILGCQVDVAYVTAQPGERERAPAPVVLLAQSEAGYENLMRLNSCLYIDKGGALPQ
VTLSELESNAGGIICLTGGPDGPVGQLLQLGQMPAAQALMDRLKAAFQDRLYIELQRHPG
ESGQPEKERLTERGFVEMAYAMDLPLVATNDVYFPNSDMYEAHDALICIAEGAYVDQQDD
RRRLTNQHYFKSQSEMVALFADLPEAIENTVEIAKRCAFQAYRRDPILPKFADDEVEELR
KQAHAGLKARLEVIPHAASVEDYTKRLDFELGIIEGMGFPGYFLIVADFIKWAKEQGIPV
GPGRGSGAGSLVAYALTVTDLDPLRYNLLFERFLNPERVSMPDFDIDFCMDRREEVIRYV
QEKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSKMIPVEGVKPVSIEKALA
DEPRLREEAKNEEVVARLLNYGQQVEGLLRNASTHAAGVVIGDRPLDALVPLYQDPRSEM
PATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVEQIMASGRPLHIAADGTELYEPAPGTE
NDINAIPLDDERSYKLYASAKTVAVFQVESSGMMDALKRMKPTCIEDIVALVALYRPGPM
ENIPTYCEVKNGLRELQSIHPLIDDILEETQGIIVYQEQVMQIAQVMAGYSLGGADLLRR
AMGKKIAEEMAKERPKFEKGAVANGVDKDKAREVFDLLEKFANYGFNKSHAAAYAVVSYQ
TAWLKANHPVEFMAGVMNCDIHLTDKLAIYFEEVRKRLELPWVPPCVNRSDATFKVADGA
LVYALGALKNVGVEAMKLITDGRRADPGDEGSPDKPFATLFDLARRVDLKRVGKRPLEML
ARSGAFDALDANRRRVFGALDALVNYSAAIHEQKASNQVSLFGEAGDDLPEPRLHPVDDW
QPAERLSEEFKAVGFYLSGHPLDDYMGQLKRKWGNDRGVPFMTLDELTEKVTERGAMNAR
LAGIVAGRQERKSARGNRFAFAQMSDPTGAYEVTLFSDTLEAARDYLEAGSKVVVTVEAT
MESDQLKLLGRSVGPIDAATADVSSMGLKVFVDAPEAVAAVATVLEGAGRAVKGRAQGPV
MLCLMGADLPGEVEVELGQDFIVNPQIKGAIKSLSGVLEVEEI
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgagcacacatccccgattcattcacctgcgcacccactccgaatactccctgctggaa
ggggcgctgcgcctgaaaaaactgccctcaatgtgccgcgatgcgggcatgcctgccttg
gcgttgacggataagaacaacatgtttgccgctctggagttttcagttgccatgtccggg
gcaggcgttcagccaattctgggctgtcaggtcgatgtggcctatgtcaccgcacagccg
ggggagagggaacgcgcgcccgcacccgtcgttttgctcgcccagagtgaggctgggtac
gagaacctgatgcggctgaactcgtgcctttacatcgacaagggcggggccttgccgcag
gtgacgctgtcggaactggaaagcaatgccggcgggatcatctgcctgacgggcgggccg
gatggcccggtggggcaacttttgcaacttggtcagatgcctgccgcgcaggcgctgatg
gaccggctgaaagcggcgtttcaagaccggctttacattgaattgcagcgccatccgggc
gagtccggccagccggagaaggagcggttgaccgagcgcggcttcgtggaaatggcctat
gcgatggacctgccgctggttgcgaccaatgatgtctatttcccgaactcagacatgtat
gaagcgcatgatgcgttgatctgcattgcagagggcgcctatgtcgatcagcaggacgac
cgtcgccgcctgaccaatcagcattatttcaagtcgcaatcggagatggtcgctctgttt
gcggacctgccggaagccattgagaacaccgttgaaattgccaagcgctgcgcctttcag
gcgtataggcgcgatcccattttgcccaagttcgcagatgacgaggtcgaggagttgcgc
aaacaagcgcatgccggcctcaaggctcggctggaggttattccccatgccgcgagcgtc
gaggactataccaaacggctcgatttcgagcttggcattatcgagggcatgggctttccc
ggctactttctgatcgttgcggatttcatcaaatgggccaaggagcaggggatacccgtc
gggccgggccgcgggtcgggcgcgggaagccttgtggcctatgcgctgacggtcacggac
cttgatccgctacgctacaacctgctgttcgaacgtttcctgaacccggaacgtgtgtcg
atgccggactttgatatcgacttctgtatggatcgccgcgaagaggtcatccgctacgtt
caggagaagtatggccgcgacaaggtgggacaaatcatcacttttggtgcgcttttgtca
aaggctgcggtgcgcgatatcggccgtgttctgcaaatgccctatggtcaggtggaccgt
ctgtccaagatgatacccgtcgagggcgttaagcctgtgtcgatcgaaaaggcgctggcg
gatgagccgcgcctgcgcgaagaggccaagaacgaagaggtcgtggcgcgtctactgaac
tacggccagcaggtcgaggggctgttgcgcaacgcctccacccacgccgccggggttgtg
atcggcgacaggccgctcgatgctttagtgccgctttatcaggacccaagatccgaaatg
cccgccacccagttcaacatgaaatgggtggaacaggcaggactggtcaaattcgacttt
ctgggcctcaagacgctgaccgtgatccagaacgcggttgaacagatcatggcatcgggc
aggccgctgcacattgccgccgacgggacggagctttatgaaccggctccgggcacggaa
aacgacatcaatgcgatcccgctggatgatgaacggtcctacaagctttatgccagcgcc
aagacggtggccgtgtttcaggtggaaagctcgggcatgatggatgcgctgaaacgcatg
aaacccacctgtatcgaggatatcgtcgcacttgtggcgctttatcgtcccggcccgatg
gagaacatcccgacctattgcgaggtcaagaacggcctgcgcgaactgcaatccatccac
ccgttgatcgacgatattcttgaggaaacgcaaggtatcatcgtttatcaggaacaggtg
atgcagatcgcgcaggtcatggcgggctatagccttggcggtgctgatctgttgcgccgc
gccatgggtaaaaagatcgccgaagagatggccaaggaacgccccaagttcgaaaagggc
gcggtggccaatggcgtcgacaaggacaaggcgcgcgaagtctttgacctactggagaaa
ttcgccaactacgggttcaacaaatcgcacgcggcggcctatgcggtcgtcagctatcaa
acggcgtggctcaaggcgaaccacccggtggagttcatggccggtgtcatgaattgcgat
atccacctgaccgacaagctggcgatctatttcgaagaggtgcgcaagcggctggaactg
ccctgggtgccgccctgcgtgaaccgctctgatgcgacgttcaaggtcgcggatggggcg
ctggtctatgcgcttggcgcgctaaaaaacgtcggcgtggaggcgatgaagctgatcaca
gacgggcgacgtgccgaccccggcgacgagggcagtcctgacaaacccttcgccacgctc
tttgatctggcgcggcgggtggacctgaaacgtgtgggcaaacgcccgcttgagatgctc
gcgcgctccggggcgtttgacgcattggacgccaatcggcggcgcgtctttggggcgttg
gatgcgctggtgaattattcggcggcgatccatgagcagaaagcctccaatcaggtgtct
ctctttggcgaggcgggcgatgatctgcccgaaccgcgcctgcatccggtggacgactgg
caacctgccgaacgtctcagcgaggaattcaaggcggtcggcttctacctctctggccac
ccgctggatgattacatgggtcagctgaaacgcaaatggggcaacgaccgcggcgtgccg
ttcatgacccttgatgagttgaccgaaaaagttaccgaacggggggccatgaatgcgcgc
cttgcgggtatcgtcgccggtcggcaggaacgtaaatcggcgcgcggcaaccgctttgcc
tttgcgcagatgtcggacccgaccggtgcctatgaggtgacgctgttttccgacacgctg
gaggcggcccgcgattacctggaggccggatcgaaagtcgtcgttacggttgaggcgacg
atggaatccgatcaacttaaacttctgggccgctctgtggggccgattgacgccgccacg
gcggatgtcagcagcatggggctcaaggtctttgtcgacgcacccgaagcggtggccgcc
gtcgcaacagtgcttgaaggggcgggccgcgcggtcaagggtcgtgcgcaggggccggtc
atgctgtgcctgatgggggcggatttgccgggcgaggtcgaggttgaactggggcaggat
ttcatcgtgaacccgcagatcaagggcgcgatcaaatccctctccggcgtgctggaggtc
gaggaaatctga
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