Rhodococcus erythropolis BG43: XU06_21400
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Entry
XU06_21400 CDS
T03842
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
reb
Rhodococcus erythropolis BG43
Pathway
reb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
reb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
XU06_21400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
reb03400
]
XU06_21400
Enzymes [BR:
reb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
XU06_21400
DNA repair and recombination proteins [BR:
reb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
XU06_21400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AKD98955
LinkDB
All DBs
Position
complement(4706367..4708643)
Genome browser
AA seq
758 aa
AA seq
DB search
MATTDRGQITLDGTTVSVTNLGKILYPESGTTKAEVIDYYTRIAAVMLPHVVGRPGTRKR
WPNGVDGQSFFEKNLASSAPQWLTRASLQHSDRVVTYPIFDSVASLAWLGQQAALELHVP
QWRFDGSERGPATRLVFDLDPGEGVGLTECAEVARSIRDLVATLGWTAYPVTSGSKGIHL
YVPLDRALDGSGASTVAKQIATGLEKLHPDLVTATMARNVRAGKIFVDWSQNNAAKTTIA
PYSMRGRDQPYVAAPRSWDELDDPKLRHLLFDEVLERVESDGDLLGDLDPPVSASVADTL
THYRNKRSADRTPEPIPAAVRKETAGNTFVIQEHHARRLHYDVRLERDGVLVSWAVPKGV
PTSAGENRLAVHTEDHPLEYATFSGTIPKGEYGGGSMTIWDSGTYETEKWREDEVIVRLS
GERVHGRFALIRTKGDQWLMHLMKDQNASFGTEFPKNLEPMLATAGTLEGLDPQEWAFEG
KWDGIRVILEYHSGTMSLRSRAGNDKTRDYPALAGLAEVLDGHDVVLDGEVVAYNDAGVT
DFGLLQRGGEPVFLAFDLLYLDGVSLLRKSYSDRRTVLNALAGKVGELEVPPQIEGTAEN
ALEVSTDAGWEGIVAKRRASVYLPGRRGSSWIKVKNWRTQEVVIGGWRTGQGNRAQGIGA
LLMGIPGEDGLTYVGRVGTGFSDRDLESLLAVLEPLRQKESPFEEELPADDRKGAVWVRP
ELVGEARFMDWTATGRLRHPSWRGLREDKKPGDVTGRE
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgacggatcggggtcagatcactctcgacggcacaaccgtgtccgtgaccaat
ctgggcaagatcctctaccccgagagcggcaccacgaaggccgaagtcatcgactactac
acccgtatcgccgcagtcatgcttccacatgtcgtcggtagaccgggcactcgtaagcgt
tggcccaacggtgtggacggtcagtccttcttcgagaagaacctggcgtcgtctgccccg
cagtggctcacgcgtgcgtcgctgcaacattctgatcgcgtcgtcacttacccgatcttc
gattccgttgcatccctggcgtggctggggcaacaggcggcactcgaattacacgttccc
caatggcgattcgacggttccgagcgtggtccggcgacacgactggtattcgatctcgac
ccgggtgagggtgtcggattgaccgagtgcgccgaggtggcgaggtcgattcgagatctg
gtcgcaactctggggtggacggcctatccggtaaccagtggtagcaagggaatccacctc
tacgttccactggatcgagcgttggacggcagtggtgcgtcgactgtcgccaagcagatc
gccaccgggctcgagaagcttcacccggatctcgtcaccgcgacgatggcgcgaaatgtc
cgggcaggcaagatcttcgttgactggagtcagaacaacgcagccaagaccaccattgcg
ccgtattcgatgcgcggtcgcgatcaaccctatgttgccgcgccgcgcagttgggacgaa
ctcgacgatccgaaactgcgccacctgctgttcgacgaggttctggagcgcgtcgaatcc
gacggtgatctgctgggcgatctggatccgccggtctcggcgtctgtagccgatacgttg
acgcactaccgcaacaagaggtcggccgaccggactccggagccgatccctgctgcagtg
cgcaaggagacagcgggcaatacctttgtgattcaagaacatcacgccagacgattgcat
tacgacgttcgtctcgagcgggatggtgtgctcgtgtcctgggcagtcccgaagggtgtg
ccgaccagtgccggagaaaatcggttggccgtgcacaccgaggatcatccgctcgaatac
gccacgttctcgggcacgattccgaagggggagtacggcggcggttcgatgacgatctgg
gattccgggacatacgagaccgagaagtggcgtgaagacgaggtgatcgtgcgcttgagt
ggggagcgggtgcatggacgcttcgcgctgatccggacaaagggtgatcagtggttgatg
catctgatgaaggatcagaacgcgagtttcggaacggagtttcccaagaatctcgagccg
atgcttgccaccgctggaacgctcgaaggtctcgacccgcaggagtgggccttcgaagga
aagtgggacgggattcgagtgattctcgaatatcattcgggcacaatgtctcttcgcagt
cgcgcgggtaacgacaagacccgggactatccagcccttgccgggttggccgaggtgctg
gacggtcatgacgtggttctcgacggtgaagtggtggcgtacaacgacgcgggagttaca
gatttcggcctcctccagcgaggtggggaaccggtgttcctggccttcgatcttctgtac
ctcgacggagtgtctttgctgcggaagtcctattcggatcgccgcaccgtgttgaatgcg
ttggcgggcaaggtcggtgagctcgaggtaccaccgcagatcgagggcacggcggagaac
gccttggaggtgagtaccgatgccgggtgggaagggattgtcgccaaacgtcgtgcatcg
gtctaccttccagggcggcgggggtcgagttggatcaaggtgaagaactggcgcacccaa
gaggtggtgatcggtgggtggcgcaccgggcagggcaatcgagcgcaggggatcggggcg
ctgctcatgggaattccgggtgaggacggattgacctacgtggggcgcgtcggtaccgga
ttcagtgatcgtgatttggagtcactgcttgcggtgctggaaccgttgcgtcagaaggaa
agtccgtttgaggaggaacttccagcagatgaccgcaagggtgcggtgtgggtgaggcct
gaactcgtcggtgaggcgcggttcatggattggacggcgaccggacgccttcgccatccg
agttggcggggtctgcgggaggacaagaagccgggcgatgtcacaggacgagaatag
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