Rhodococcus erythropolis BG43: XU06_30590
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Entry
XU06_30590 CDS
T03842
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
reb
Rhodococcus erythropolis BG43
Pathway
reb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
reb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
XU06_30590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
reb03400
]
XU06_30590
Enzymes [BR:
reb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
XU06_30590
DNA repair and recombination proteins [BR:
reb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
XU06_30590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
AKE01290
LinkDB
All DBs
Position
pRLLBG43:complement(40218..41192)
Genome browser
AA seq
324 aa
AA seq
DB search
MSAATGKPVPPMLATLGQPPTGERWAFESKWDGQRAIATTGSTPAVLWSRNGNNISGSFP
EIADALRSVLDHRETVLDGEIVALGPDGVPSFSLLQRRMHVLRPTAQLRNEAVTSYYVFD
VLDVDGTSTTELPYLERREALANLSLEHPCIKVPPHWLNVDGPTMLEVARKHHLEGIVAK
NIASIYQPGKRSRDWIKTPLRANCEAILCGFLPGSGGAAGGVGSLILGAHDDSGVLKYIG
NVGTGLTDRQRRELRGKLVELEQSISPFTIEPPRAVTRNASWSRPVLVCDVEYREYTGGS
LRHPSFRGLRNDKIADEVDLPGRH
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccgccacaggaaagccggttccgccgatgctcgccacgctcggacagcccccg
acaggggaacgctgggcattcgagtcgaaatgggatggccaaagggcaatagccacaaca
ggttccacgcctgcggttctatggtcgcgcaacggcaacaacatcagcggatcattcccc
gagatcgccgatgcactccgttctgtgctcgatcaccgcgaaactgtcctcgacggtgaa
atcgtcgctcttggacccgacggtgtgccgtccttctcccttttgcagcgcaggatgcac
gtcctccgacccaccgctcagctccgcaacgaggccgtgacctcgtattacgtgttcgac
gttctcgacgtcgacggcacatcgaccaccgagctgccctacctcgagcgccgcgaagcg
ctcgccaatctcagcctcgaacacccttgcatcaaagtcccaccccactggctcaacgtc
gacggaccgacgatgctcgaggtggcgcgcaaacaccacctcgaagggatcgtggccaag
aatattgcctcgatctaccagcccggcaagcgatctcgcgactggatcaaaacgcctctg
agggctaattgtgaggccatattgtgcggcttcctccctggatcgggtggcgcagcaggc
ggagtcggatcgctgatcctcggcgctcacgacgactccggagtgctcaaatatatcgga
aacgttggtacgggtctgaccgaccgacagcgccgcgagctgcggggcaagctcgtcgaa
ctcgaacagtcgatcagcccgttcaccatcgagccgccgagagcggtcacccgcaatgct
tcctggtcaaggcctgtcctggtctgcgacgtggagtaccgggagtacaccggcggcagc
cttcggcacccatcctttcgcgggctccgtaacgacaagatcgccgacgaggtcgacctc
cccggtcgtcactga
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