Rhizobium etli CIAT 652: RHECIAT_PA0000163
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Entry
RHECIAT_PA0000163 CDS
T00720
Name
(GenBank) putative DNA ligase protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rec
Rhizobium etli CIAT 652
Pathway
rec03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RHECIAT_PA0000163
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rec03400
]
RHECIAT_PA0000163
Enzymes [BR:
rec01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RHECIAT_PA0000163
DNA repair and recombination proteins [BR:
rec03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RHECIAT_PA0000163
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ACE93507
UniProt:
B3Q1F1
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All DBs
Position
pA:183928..184806
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AA seq
292 aa
AA seq
DB search
MSPANPPASDVSLTHPDRLYWPDEGVTKQNLADYYAAVWRFMAPYLVNRPLALLRLPDGI
KSHQRFFQKHGWKGMNSHIEEIADPEDAEGEKLLRISDFDGLFALVQSAALEIHPWGTTT
DHWERPDMIIMDLDPGEDVVWSAVITAAVDVKARLEACGLAAFVKTSGGKGLHVVAPLAP
KAGWAEVKDFAHSLAENMSADAPEKYLATATKAKRGGHIYIDYLRNGRGSTAVAPYSTRA
RPGAPVSMPLDWSDLKGLGGPAPFTLANVPQRLEVRPRDPWGDFFDAAVPLQ
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atgagccccgcaaacccaccggcatcggacgtatccctgacccatcccgaccggctttac
tggccggacgagggcgtgaccaagcagaatctggcggattattacgctgccgtctggcgt
ttcatggctccctatcttgtcaatcggccactggcgctcttgcgcctgccggacggaata
aaaagccaccagcggtttttccagaaacatggctggaaaggcatgaattcccatatcgag
gagatcgccgaccctgaggacgcggagggcgagaaactgttgcgcatttccgatttcgac
gggcttttcgcgctggtgcaatcggccgctcttgaaattcatccctggggcacgacgacc
gatcattgggaaagacccgatatgatcatcatggatctcgaccctggcgaggacgtggtc
tggagcgcggtgataacggcagcggttgatgtcaaggcgcggctggaagcctgcgggctt
gccgccttcgtcaagacctcaggcggcaaggggctgcatgtggtggcgccgcttgcgccg
aaggccggctgggccgaggtcaaggatttcgctcattcgcttgccgaaaacatgtcggcg
gatgcgccagagaaatatctggcaacggcgacgaaggcaaaacgcggcgggcatatttat
atcgattatctccgcaacggtcgcggcagcacggcggtcgcaccctattcgaccagggcg
cggccgggtgctccggtgtcgatgccgctcgattggtccgatctgaaagggctcggtggt
ccggcgcccttcaccctcgccaatgtgccgcagcggctggaggtccggcctcgcgatccc
tggggcgatttcttcgatgcggccgtgccgctgcaatga
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