Rhizobium etli CIAT 652: RHECIAT_PA0000196
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Entry
RHECIAT_PA0000196 CDS
T00720
Name
(GenBank) putative ATP-dependent DNA ligase protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rec
Rhizobium etli CIAT 652
Pathway
rec03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RHECIAT_PA0000196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rec03400
]
RHECIAT_PA0000196
Enzymes [BR:
rec01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RHECIAT_PA0000196
DNA repair and recombination proteins [BR:
rec03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RHECIAT_PA0000196
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
ACE93540
UniProt:
B3Q1I4
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All DBs
Position
pA:210674..211738
Genome browser
AA seq
354 aa
AA seq
DB search
MTRPRQPSAPLLRESSSSIQSRPVRRRDPAQPSLPFDAMPTRVEPCLALLKQTVPQGPDW
IYEVKWDGYRLAIHIEPKGIRILTRGGHDWTHRFPTIAAGASALGVSSCILDGEAVVLDE
EGRSDFGALQRSLGGRGGKRVSTESIFCAFDLLYLDGHDLTRTELSVRRHLLQDLIPGTD
EGAIRFSQELDLSGEDLLEHACHLGLEGIIAKRGDRPYRSGRLGDWQKIKCVQSDSFMIV
GYEESASTRGGLGSLLLAGRKGQDWIYVGSVGTGFNREEAEYLRKTLNRLQTKKPVVPLK
GKRLVFSQPTLIAEIEFRGWTREGSLRHASYKGLREIQDNAAVFDMTDGPAAIR
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgaccagaccacggcagccctccgccccgcttcttcgcgagtccagctcttcgatacag
tctcgacctgtccgccggcgtgatcccgcccagccaagcctgccgttcgatgcaatgccg
accagagtggagccctgcttggcgctgctgaagcaaacggtgccgcaagggccggattgg
atttatgaggtgaagtgggacggctaccgattggcgatccacatcgagccaaagggcatt
cgtatcctcacccgcggcggccatgactggacccaccgattcccaacgattgccgcagga
gcaagcgcgcttggtgtatcgagctgcattctcgacggagaagccgtcgttctcgatgaa
gagggccgctccgactttggagcgttacagcgctcgctcggcggcaggggcggcaagcga
gtttcaaccgaatccatcttctgcgccttcgatctgttatacctcgatggtcacgacctg
acgcgcaccgagctctccgtccgccgtcaccttttgcaggacctgattcccgggaccgac
gagggcgccattcggttctcgcaagaactggatttgagtggcgaggatctgctcgagcac
gcctgccatctgggcctggaaggcatcattgcgaagcgcggggaccgcccttatcggagt
ggtcgtctcggggactggcagaagatcaagtgcgttcagagcgacagtttcatgatcgtc
ggttacgaggaatccgccagcacccgcggcgggctcggcagtcttttgcttgcgggtcga
aaggggcaagactggatctatgtcggatcggtcggcacggggttcaatcgggaggaggcg
gagtatttgcgcaagacgttgaaccgtctccaaacgaaaaaacctgtggtgccgctcaaa
ggaaagcgcctcgttttttcccagccgaccctcatcgccgaaatcgagtttcgcggctgg
acgcgcgagggcagcctccgccacgcttcatataagggccttcgtgagatacaggataat
gctgccgtcttcgatatgactgatggcccggctgcgatcagatga
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