Rhizobium etli bv. mimosae IE4771: IE4771_PC00166
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Entry
IE4771_PC00166 CDS
T03310
Name
(GenBank) DNA polymerase LigD domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rei
Rhizobium etli bv. mimosae IE4771
Pathway
rei03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IE4771_PC00166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rei03400
]
IE4771_PC00166
Enzymes [BR:
rei01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IE4771_PC00166
DNA repair and recombination proteins [BR:
rei03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IE4771_PC00166
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
DUF5959
Motif
Other DBs
NCBI-ProteinID:
AIC30291
UniProt:
A0A060IF22
LinkDB
All DBs
Position
pRetIE4771c:195209..196087
Genome browser
AA seq
292 aa
AA seq
DB search
MTPANPPASDVSLTHPDRLYWPDEGVTKRNLSEYYAAVWPFMAPYLVNRPLALLRLPAGI
KSHQRFFQKHGWKGMNPHIEEIADPQDAEGEKLLRISDFDGLVALVQSAALEIHPWGTTT
DHWETPDMIIMDLDPGEDVVWSAVISAALDVKARLEARGLAAFVKTSGGKGLHVVTPLAP
KAGWAEVKDFAHSLAESMSADAPEKYLATATKAKRGGHIYIDYLRNGRGSTAVAPYSTRA
RPGAPVSMPLDWSDLKELSGPAAFTLANVPQRLETRPGDPWGDFFDAAVPLQ
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atgacccccgcaaatccgccggcatcggacgtatccctgacccatcccgaccggctttac
tggccggacgagggcgtgactaagcggaatctgtcggaatattacgccgccgtctggccc
ttcatggcgccctatctcgtcaatcggccgctggcacttttacgcctgccggctggaatt
aaaagccaccagcggtttttccagaaacatggctggaaaggcatgaatccccatatcgag
gagatcgccgatccacaggatgcggagggcgagaaactgctgcgcatttccgatttcgac
gggcttgtcgcccttgtgcaatcggcggcgcttgaaattcacccctggggcacgacgacc
gaccattgggaaacacccgatatgatcatcatggatctcgaccccggcgaagacgtggtc
tggagcgcggtgatatcggcggcacttgacgtgaaggcgcggctggaagcccgaggcctt
gcagccttcgtcaagacatcaggcggcaagggactgcatgtggtaacaccgcttgcgccg
aaggccggctgggccgaggtcaaggatttcgcccattcgcttgccgaaagcatgtcggcc
gatgcgccggagaaatatctggcaacggcgacgaaggcaaaacgcggcgggcatatctat
atcgattatctccgcaacggccgcggcagcacggcggtcgcaccttattcgaccagggcg
cggccgggtgccccggtgtcgatgccgctcgattggtccgatctgaaggaactcagcggt
ccggccgccttcaccctcgccaatgtgccgcagcggctggagacccggccgggcgatccc
tggggcgatttcttcgatgcggccgtgccgctgcaatga
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