Rhizobium etli bv. mimosae Mim1: REMIM1_CH00627
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Entry
REMIM1_CH00627 CDS
T02778
Name
(GenBank) ATP-dependent DNA ligase protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rel
Rhizobium etli bv. mimosae Mim1
Pathway
rel03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
REMIM1_CH00627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rel03400
]
REMIM1_CH00627
Enzymes [BR:
rel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
REMIM1_CH00627
DNA repair and recombination proteins [BR:
rel03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
REMIM1_CH00627
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
NdhM
Motif
Other DBs
NCBI-ProteinID:
AGS20481
UniProt:
S5RZC5
LinkDB
All DBs
Position
complement(629123..631102)
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AA seq
659 aa
AA seq
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MALETCQAKCNFKLAPKSKDGKAVAAKRPAAKARSPAPRERDWPKGARKGAMPDFIEPAL
AKLKPKPPAGDRWIHEIKFDGYRLQVRVENGKIRMLTRSGLDWTEKFGREVLEAFAALPV
QSAAIDGEIVVERDTGASNFSALQHDLSEGRNDRFVFYAFDLLHFDGYNLIDVALIDRKQ
LLESLLPDDNDKLRYSAHFNESGGLVLDHACRLSLEGVISKLRDSKYRSGRKGDWIKSKC
SHRQEFVIGGYVPSTSMKNAIGSLAVGYYQGGELKYVGRVGTGYTAATAQMLYEKLSRLT
QNENSFDDKLTSEERRGLIYVKPQLVGEVEFRAWSADGNLRHAAFRGLREDKPAKDVTRE
MEKTTAPLLPKSAVTLTHPDRIYWPDEGVTKEGLANYYAQVWRFMAPYVVNRPLALLRLP
DGINGRQRFFQKHAWKGMNPHIEEITDPKDKQGEKLLRITDFDGIVALVQSAVLEIHPWG
ASTDNWEKPDMITMDLDPDDEVAWADVIAAAYELKERLEAEGLAAFVKTSGGKGLHVVTP
LTPKAGWAEVKGFAKWLANSMSADRPDRYLATATKAKRTGRIFIDYLRNGRGNTAVAPYS
ARARPGAAVSMPLEWSELTIEVGPAYFTVDNAPTRLDALPRDPWDGFFAAAKPLEKKKR
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggccctcgaaacctgtcaggcgaagtgcaatttcaaactcgctcccaaatcgaaagac
ggcaaggcggttgccgccaaaagaccggcagcaaaggccagatccccggcaccacgagaa
cgcgactggccgaagggtgcgcgcaagggcgcaatgcccgatttcatcgaaccggcgctt
gccaagctgaagccgaagccgccggctggtgaccgctggattcacgaaatcaagtttgac
ggctaccggctgcaggtcagagtcgagaacggcaagatcagaatgttgacccgcagcggc
ctcgactggacggagaaattcggccgcgaggtgctagaggcctttgccgccctgccggtg
caatcggcggcgatcgatggcgaaatcgtcgtcgagcgcgataccggcgcctcgaacttc
tcggcacttcagcacgatctgagcgagggccgcaacgatcgcttcgtcttctatgccttc
gatcttctccacttcgacggctacaacctcatcgatgtggcgctcatcgatcgcaagcag
ctgctcgaaagcctgctgcccgacgataacgacaagctgcgttacagcgcgcatttcaac
gaaagcggcggcctcgtgctcgaccatgcctgtcggctcagcctcgaaggggtgatttcc
aaactgcgcgatagcaaatacaggtcgggacgcaaaggtgattggatcaaatcgaaatgc
tcgcaccggcaggaattcgtcatcggcggctacgtgccgtcgacatcgatgaagaatgcg
atcggctcactggcggtgggctattaccaaggcggtgaactcaagtatgtcgggcgcgtc
ggcaccggatatacggcggcaaccgcacagatgctctatgagaaactgtcgcgtctgacg
cagaacgagaattcattcgacgacaagctgacgtcagaggagcggcgcgggctgatctat
gtcaagccgcagctggtcggcgaggtcgagttccgcgcctggtcggccgacggcaatctg
cgccatgcggcctttcgcggcctgcgcgaagacaaacctgccaaggacgtgacacgcgag
atggaaaagaccacagcgcctctcctgccgaaatcggcagtgacactcacccatcccgac
cgcatctattggccggacgagggtgttaccaaagaggggctggcgaattattatgcccag
gtctggcgcttcatggcgccctatgtcgtcaaccgccccttggcgcttctgcgcctgccg
gacggaatcaacggccggcagcgctttttccagaaacatgcctggaaaggcatgaatccg
catatcgaggagatcaccgaccccaaggacaagcagggggagaagctgctgcggataacc
gatttcgacggcatcgtggccctggtgcaatcggccgtgcttgaaatccacccctggggt
gcttcgaccgacaattgggaaaagcccgatatgatcaccatggacctcgatcccgatgac
gaggtggcgtgggcagatgtgatcgccgccgcttacgaattgaaggagcggctggaggcc
gaaggcctcgccgccttcgtcaagacctcgggcggcaaggggctgcatgtggtgacgccg
ctcacgccgaaggccggctgggccgaggtgaagggtttcgccaaatggcttgccaacagc
atgtccgccgaccgtccggaccgttatctggcgacggcgacgaaggccaagcgcacgggg
aggatcttcatcgactatctccgcaacggccgcgggaatacggcggtcgcgccctattcg
gcacgggcacggccgggtgcggcggtctcgatgccgctggaatggagcgaactcaccatc
gaggtcggaccggcctatttcacggtggacaatgcgccgacccggctcgacgcgctgccg
cgtgatccctgggacggatttttcgccgcggcgaaaccgttggaaaagaagaagcggtag
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