Rhizobium etli bv. mimosae Mim1: REMIM1_PD00265
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Entry
REMIM1_PD00265 CDS
T02778
Name
(GenBank) ATP-dependent DNA ligase protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rel
Rhizobium etli bv. mimosae Mim1
Pathway
rel03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
REMIM1_PD00265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rel03400
]
REMIM1_PD00265
Enzymes [BR:
rel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
REMIM1_PD00265
DNA repair and recombination proteins [BR:
rel03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
REMIM1_PD00265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
CTK3_C
Motif
Other DBs
NCBI-ProteinID:
AGS24876
UniProt:
S5SBQ2
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All DBs
Position
pRetMIM1d:complement(288539..291187)
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AA seq
882 aa
AA seq
DB search
MASDKLSSYRSKRDFQKTAEPSGERSLKQSNRRRFVIQKHDATRLHYDLRLELDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWKPEGRKSPE
QALSKGDFKFTLEGERLHGSFVLVRMRNDRERSKRTNWLLIKHHDEFSVDENGASILEEN
VTSVASGRSMEMIAAGKGRKPKPFMVEGGKVQADAVWDSNHGLAAEERQSEASAGKRAGT
ATAVDLPDFIAPQLCEKVERPPGGDGWIHEIKFDGYRIQMRVLDGEVTLKTRKGLDWTAK
YPEIAEAASGLPDCILDGEICALDEQGAPNFAALQAALSEGKTASLVYFAFDLLYHGGED
LRSKPLIERKRRLQELLTEAGNDPRIRYVEHFETGGDAVLRSACKLSLEGIISKQADAPY
QSGRTESWAKSKCRAGHEVVIGAYAKTNGRFRSLLAGVFRGDHFVYVGRVGTGYGAKKVE
TLLPKLKALETARSPFTGIGAPKKQAEVVWVKPELVAEIEFEGWTADGLVRQAAFKGLRE
DKPAREVEAEPPVRPAKADIAEPVPRARQTPARRKGAKADVMGVLISNPDKPLWPDANGS
EPVTKEELAGYYEAVGDWMIDHIKGRPCSIIRAPDGIGGEQFFQRHAMPGQSNLLDLVKV
FGDKKPYLQIDRIEGLAAVAQIAAVELHPWNCEPGQPEVPGRLVFDLDPGPDVPFATVVA
AAREMRDRLEDLGLISFCKTTGGKGLHVVTPLAVNKRKPLSWPEAKAFAHDVCQQMARNN
PDLYLIKMTKSLRGGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWTQVKSDLDPK
RFTIRTVPALLSKSSAWKDYCEGQRPLEQAIKKLGRAGKHAA
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atggccagcgacaagctatcaagctatcgatcaaaacgcgattttcagaagaccgctgag
cccagcggcgagcggtccctcaaacagagcaaccgccgtcgctttgtcatccagaagcac
gatgcgacacgcctgcactacgacctgcggctcgagcttgatggcgtgttcaagagctgg
gccgtcaccaaagggccatcgctcgatccgcacgacaagcggctggcggtcgaggtcgag
gatcatcccctcgattatggcgacttcgaaggcactattccgaaaggccagtatggcggt
ggcacggtcatgctgtgggatcgcggctattggaagccggagggcaggaagagcccggag
caggcgctttccaagggtgatttcaagttcacgctcgaaggcgagcgcctgcacgggagc
ttcgtgctggtgcgcatgcgcaacgatcgcgagcgcagcaagcgtaccaattggctgttg
atcaagcatcacgacgagttctccgtggacgagaacggtgcttcgatcctcgaagaaaac
gtcacctcggtggcctcaggccgcagcatggaaatgatcgcagccggcaaggggcgcaag
ccgaaacccttcatggtggagggcggcaaggtccaggcggacgccgtctgggacagcaat
cacggactggccgccgaggagcggcagtcggaggcgagcgcgggaaagcgcgccggtact
gcgacggcggttgatcttccggatttcatcgcgccgcaactctgcgagaaggtcgagcga
ccgcctggcggggacggttggatccatgagatcaagttcgatggatatcgcattcagatg
cgcgtgctcgatggcgaagtcaccttgaagaccaggaaaggcctcgactggacggccaag
taccccgaaatcgccgaggcggcgtctgggcttccggattgtatcctcgatggcgagatt
tgcgctctcgacgagcaaggtgcgcctaacttcgcggcactccaggcggcgctatcggag
ggcaagaccgccagcctcgtctacttcgccttcgacctgctctatcacggcggcgaggat
ctccgctcgaagcccctgatcgagcgaaagaggcgattgcaggagctcctcaccgaggcc
ggcaacgatcctcggatccgctacgtcgaacacttcgagaccggcggtgacgccgtcctc
agatcggcatgcaagctctcgctggaaggcatcatctcaaaacaggcagatgccccctat
caatccggacgaacggaaagctgggcgaagtcgaaatgccgggcggggcacgaggtggtg
atcggcgcctacgccaaaaccaacggcaggtttcgttcccttctcgccggtgtttttcgc
ggcgatcattttgtctatgtcggccgtgtcggaaccggctacggcgccaagaaagtcgaa
acgttgcttccgaaactgaaggcgctggagacggcgagatcgcccttcacgggtatcggt
gctccgaagaagcaggccgaggtcgtctgggtaaagccggaacttgtcgccgaaatcgaa
ttcgaggggtggaccgcggacggtctcgtccgccaagcagccttcaaaggattgcgcgaa
gataagcctgctcgggaagtcgaggcggagccaccagtaagacccgccaaagcggacatc
gcggagccggttccgagagccaggcaaacacccgcgcgccgcaagggtgcgaaggctgat
gtcatgggagtgctcatctcaaacccggacaaaccattgtggccggatgccaacggcagc
gaaccggtcacgaaggaagaattggcgggctattacgaggcagtcggcgactggatgatc
gaccacatcaagggcaggccctgctctatcatccgcgccccggatggaattggcggcgag
cagttctttcagcgccatgcgatgccgggacaatcgaacctgctcgacctggtcaaggtg
ttcggggacaaaaagccatacctgcagatcgatcgcatcgaaggccttgccgcggtcgcc
cagatcgcagcggtcgaactccatccgtggaactgcgaacccggtcaaccggaagttcct
ggtcgtctggtattcgacctcgatcccgggcctgacgttccctttgccacggtcgttgcc
gctgcccgcgaaatgcgcgatcggctggaagacctcggactgatcagcttttgcaagacg
acgggcggcaagggcctgcatgtcgtgaccccgcttgcggtcaataagcgcaagccgctg
tcatggcccgaggcaaaggctttcgcgcatgacgtctgccagcagatggcccgaaacaac
cccgatctctaccttatcaagatgacgaagagcctgaggggcggtcgcattttcctcgat
tacctgcgcaatgatcgcatggcgacggccgtagcgccgctttctcctcgagcccgcccc
ggtgcgacggtatcaatgcctctgacgtggacgcaggtgaaatcagacctcgaccctaaa
aggttcacgatccgaaccgtacctgccttgctatcgaagtcgtccgcctggaaggattat
tgtgaggggcagcgtcccttggagcaggcgattaagaagctcggccgcgccggcaagcat
gccgcgtga
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