Rhizobium etli bv. phaseoli IE4803: IE4803_PA00165
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Entry
IE4803_PA00165 CDS
T03667
Name
(GenBank) DNA polymerase LigD domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rep
Rhizobium etli bv. phaseoli IE4803
Pathway
rep03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IE4803_PA00165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rep03400
]
IE4803_PA00165
Enzymes [BR:
rep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IE4803_PA00165
DNA repair and recombination proteins [BR:
rep03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IE4803_PA00165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
DUF5959
Motif
Other DBs
NCBI-ProteinID:
AJC81809
LinkDB
All DBs
Position
pRetIE4803a:185474..186352
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AA seq
292 aa
AA seq
DB search
MTPANPPASDVSLTHPDRLYWPDEGVTKQSLAEYYAAVWPFMAPYLVNRPLALLRLPAGI
KSHQRFFQKHGWKGMSSHIEEIADPQDAEGEKLLRVSDFDGLVALVQSAALEIHPWGTTT
DHWETPDMIIMDLDPGEDVVWSAVISAALDVKARLEARGLAAFVKTSGGKGLHVVTPLAP
KAGWAEVKDFAHSLAESMSADAPEKYLATATKAKRGGHIYIDYLRNGRGSTAVAPYSTRA
RPGAPVSMPLDWSDLKELSGPAAFTLANVPQRLETRPRDPWGDFFDAAVPLQ
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atgacccccgcaaatccgccggcatcggacgtatccctgacccatcccgaccggctttac
tggccggacgagggcgtgactaagcagagtctggcggaatattacgccgccgtctggccc
ttcatggcgccctatctcgtcaatcggccgctggcacttttgcgcctgccagctggaata
aaaagccaccagcggtttttccagaaacatggctggaaaggcatgagttcccatatcgag
gagatcgccgatccacaggacgcggagggcgagaaactgctgcgcgtttccgatttcgac
gggcttgtcgcgctggtgcaatcggcggcgcttgaaattcacccctggggcacgacgacc
gaccattgggaaacacccgatatgatcatcatggatctcgaccccggcgaggacgtggtc
tggagcgcggtgatatcggcggcacttgacgtgaaggcgcggctggaagcccgaggcctt
gcagccttcgtcaagacatcaggcggcaaggggctgcatgtggtaacaccgcttgcgccg
aaggccggctgggccgaggtcaaggatttcgcccattcgcttgccgaaagcatgtcggcc
gatgcgccggagaaatatctggcaacggcgacgaaggcaaaacgcggcgggcatatctat
atcgattatctccgcaacggccgcggcagcacggcggtcgcaccctattcgaccagggcg
cggccgggtgccccggtgtcgatgccgctcgattggtccgatctgaaggaactcagcggt
ccggccgccttcaccctcgccaatgtgccgcagcggctggagacccggccgcgcgatccc
tggggcgatttcttcgatgcggccgtgccgctgcaatga
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