Rhizobium etli CFN 42: RHE_CH00617
Help
Entry
RHE_CH00617 CDS
T00317
Name
(GenBank) putative DNA ligase protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ret
Rhizobium etli CFN 42
Pathway
ret03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ret00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RHE_CH00617
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ret03400
]
RHE_CH00617
Enzymes [BR:
ret01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RHE_CH00617
DNA repair and recombination proteins [BR:
ret03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RHE_CH00617
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
NdhM
Motif
Other DBs
NCBI-ProteinID:
ABC89433
RhizoBase:
RHE_CH00617
UniProt:
Q2KCK3
LinkDB
All DBs
Position
complement(635560..637539)
Genome browser
AA seq
659 aa
AA seq
DB search
MALETCQAKRNFKLAPKSKDGKAVAAKRPAAKARSPAPRERDWPKGARKGAMPDFIEPAL
AKLKPKPPAGDRWIHEIKFDGYRLQVRVENGKIRMLTRSGLDWTEKFGREVLEAFAALPV
QSAAIDGEIVVERDTGASNFSALQHDLSEGRNDRFVFYAFDLLHFDGYNLVDVALIDRKQ
LLESLLPDDNDKLRYSAHFNESGGLVLDHACRLSLEGMISKLRDSKYRSGRKGDWIKSKC
SHRQEFVIGGYVPSTSMKNAIGSLAVGYYQGGELKYVGRVGTGYTAATAQMLYEKLSRLT
QNENSFDDKLTSEERRGLIYVKPQLVGEVEFRAWSADGNLRHAAFRGLREDKPAKDVTRE
MEKTTAPLLPKSAVTLTHPDRIYWPDEGVTKEGLANYYAQVWRFMAPYVVNRPLALLRLP
DGINGRQRFFQKHAWKGMNPHIEEITDPKDKQGEKLLRITDFDGIVALVQSAVLEIHPWG
ASTDNWEKPDMITMDLDPDDEVAWADVIAAAYELKERLEAEGLAAFVKTSGGKGLHVVTP
LTPKAGWAEVKGFAKWLADSMSADRPDRYLATATKAKRTGRIFIDYLRNGRGNTAVAPYS
ARARPGAAVSMPLEWSELTIEVGPAYFTVDNAPTRLDALPRDPWDGFFAAAKPLEKKKR
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggccctcgaaacctgtcaggcgaagcgcaatttcaaactcgctcccaaatcgaaagac
ggcaaggcggttgccgccaaaagaccggcagcaaaggccagatccccggcaccacgagaa
cgcgactggccgaagggtgcgcgcaagggcgcaatgcccgatttcatcgaaccggcgctt
gccaagctgaagccgaagccgccggcgggtgaccgctggattcacgaaatcaagtttgac
ggctaccggctgcaggtcagagtcgagaacggcaagatcagaatgttgacccgcagcggc
ctcgactggacggagaaattcggccgcgaggtgctagaggcctttgccgccctgccggtg
caatcggcggcgatcgatggcgaaatcgtcgtcgagcgcgataccggcgcctcgaacttc
tcggcacttcagcacgatctgagcgagggccgcaacgatcgcttcgtcttctatgccttc
gatcttctccacttcgacggctacaacctcgtcgatgtggcgctcatcgatcgcaagcag
ctgctcgaaagcctgctgcccgacgataacgacaagctgcgttacagcgcgcatttcaac
gaaagcggcggcctcgtgctcgaccatgcctgtcggctcagcctcgaagggatgatttcc
aaactgcgcgatagcaaatacaggtcgggacgcaaaggtgattggatcaaatcgaaatgc
tcgcaccggcaggaattcgtcatcggcggctacgtgccgtcgacatcgatgaagaatgcg
atcggctcactggcggtgggctattaccaaggcggtgaactcaagtatgtcgggcgcgtc
ggcaccggatatacggcggcaaccgcacagatgctctatgagaaactgtcgcgtctgacg
cagaacgagaattcattcgacgacaagctgacgtcagaggagcggcgcgggctgatctat
gtcaagccgcagctggtcggcgaggtcgagttccgagcctggtcggccgacggcaatctg
cgccatgcggcctttcgcggcctgcgcgaagacaaacctgccaaggacgtgacacgcgag
atggaaaagaccacagcgcctctcctgccgaaatcggcagtgacactcacccatcccgac
cgcatctattggccggacgagggtgttaccaaagaggggctggcgaattattatgcccag
gtctggcgcttcatggcgccctatgtcgtcaaccgccccttggcgcttctgcgcctgccg
gacggaatcaacggccggcagcgctttttccagaaacatgcctggaaaggcatgaatccg
catatcgaggagatcaccgaccccaaggacaagcagggggagaagctgctgcggataacc
gatttcgacggcatcgtggccctggtgcaatcggccgtgcttgaaatccacccctggggt
gcttcgaccgacaattgggaaaagcccgatatgatcaccatggacctcgatcccgatgac
gaggtggcgtgggcagatgtgatcgccgccgcttacgaattgaaggagcggctggaggcc
gaaggcctcgccgccttcgtcaagacctcgggcggcaaggggctgcatgtggtgacgccg
ctcacgccgaaggccggctgggccgaggtgaagggtttcgccaaatggcttgccgacagc
atgtccgccgaccgtccggaccgttatctggcgacggcgacgaaggccaagcgcacgggg
aggatcttcatcgactatctccgcaacggccgcgggaatacggcggtcgcgccctattcg
gcacgggcacggccgggtgcggcggtctcgatgccgctggaatggagcgaactcaccatc
gaggtcggaccggcctatttcacggtggacaatgcgccgacccggctcgacgcgctgccg
cgtgatccctgggacggatttttcgccgcggcgaaaccgttggaaaagaagaagcggtag
DBGET
integrated database retrieval system