Rhizobium etli CFN 42: RHE_PE00060
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Entry
RHE_PE00060 CDS
T00317
Symbol
pcaQ
Name
(GenBank) transcriptional regulator (activator) protein of the pca operon, LysR family
KO
K02623
LysR family transcriptional regulator, pca operon transcriptional activator
Organism
ret
Rhizobium etli CFN 42
Brite
KEGG Orthology (KO) [BR:
ret00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ret03000
]
RHE_PE00060 (pcaQ)
Transcription factors [BR:
ret03000
]
Prokaryotic type
Helix-turn-helix
LysR family
RHE_PE00060 (pcaQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LysR_substrate
HTH_1
HTH_30
HTH_23
MarR
Fe_dep_repress
Mga
OpuAC
Motif
Other DBs
NCBI-ProteinID:
ABC93499
UNAM_e:
RE1PE0000060
RhizoBase:
RHE_PE00060
UniProt:
Q2K055
LinkDB
All DBs
Position
p42e:73421..74338
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AA seq
305 aa
AA seq
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MIDSRVKFRHLQTFVEVARQKSVMKAAELLHVSQPAVTKTIRELEEVLGVDVLERDGRGI
KITRYGEVFLRHAGAALTALRQGLDSVSQEQFAGAPPIRIGALPTVSSRIMPRAMELFLK
ENTRSRVKIVTGENAVLLEELRVGDLDLVVGRLAGAEKMAGFSFEHLYSEQVVFAVRAGH
PLLNGRQSLFSGFGDYTVLMPTRGSIIRPVVENFLIANGISSLPNQIETVSDSFGRAFLR
ASDAIWIISNGVVAGDVADGRLALLPVDTGETKGPVGLTIRADAVPSAPQSILMQTIREA
AAELS
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atgatcgacagccgcgtgaagtttcgccatctgcagacctttgtcgaggtggcgcggcag
aagagtgtgatgaaggcagccgagctgctgcatgtcagccagccggcggtgacgaagacg
atccgcgagctggaagaggtgctgggcgtcgacgtcttggagcgggacggccgcggcatc
aagatcacccgctacggcgaggtcttcctgcgccatgccggggcggcgctgacggcgctg
cgtcagggtctcgattcggtctcgcaggagcagtttgccggtgcgccgccgatccggatc
ggcgccctgccgacggtgtcgtcgcggatcatgccgcgggcgatggaactcttcctcaag
gaaaatacccggagccgggtgaagatcgtcaccggcgaaaacgccgtgctgctggaagag
cttcgcgtcggcgatctcgacctcgtggtcggccgcctggccggggcggagaagatggcg
ggcttctccttcgaacatctctattccgaacaggtggtgtttgccgtgcgcgccggccat
ccgctgctcaacggccggcaatcgctgttttcaggtttcggcgattatacggtgctgatg
ccgacgcgcggctcgatcatccggccggtcgtcgaaaatttcctcatcgccaacggtatc
tccagcctgccgaaccagatcgagacggtgtcggattccttcggccgcgccttcctgagg
gcaagcgatgcgatctggatcatttccaacggcgtggtggcaggcgatgtcgccgatggg
cggctggcgcttctgccggtcgacaccggcgaaaccaaggggccggtcgggctgacgata
cgcgccgatgccgtgccgtcggcgccgcaatcaatcctgatgcagacgatccgtgaggcg
gccgcagagctttcctga
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