Rhizobium etli CFN 42: RHE_PE00251
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Entry
RHE_PE00251 CDS
T00317
Name
(GenBank) putative DNA ligase (ATP) protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ret
Rhizobium etli CFN 42
Pathway
ret03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ret00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RHE_PE00251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ret03400
]
RHE_PE00251
Enzymes [BR:
ret01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RHE_PE00251
DNA repair and recombination proteins [BR:
ret03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RHE_PE00251
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
ABC93686
UNAM_e:
RE1PE0000251
RhizoBase:
RHE_PE00251
UniProt:
Q2K0P1
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Position
p42e:281001..282065
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AA seq
354 aa
AA seq
DB search
MTRSRRPSAPLLRDSSSSIQSRPVRRRDPDQPNLPFDAMPSRVEPCLALLKQTVPQGPDW
LYEVKWDGYRLALHIEPKGIRILTRGGHDWTRRFPTIAARARELGVSSCILDGEAVVLDE
EGRSDFGALQRSLGGRGGKRISTESIFYAFDLLYLDGHDLTRTELSVRRHLLEDLIPAAD
GGAIRFSQELDLGGEELLEHACRLGMEGIIAKRTDSPYRSGRLGDWQKIKCVQSESFMIV
GYEESASTRGGLGSLLLAGRKGHDWIYVGSVGTGFNRTEAEYLRKTLNRLQTKKPIVPLK
GKRLVFSQPTLIAEIEFRGWTREGSLRHPSYKGLREIQDNAAVFDMADGPAAIR
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgaccagatcacggcgcccctccgcccccctccttcgcgactccagttcttcgatacaa
tcgcgacctgtccgtcggcgtgatccggaccagccaaacctgccgttcgatgcaatgccg
tccagagtggagccctgcctggcgctgctgaagcagacggtgccacaagggccggattgg
ctttatgaggtgaagtgggacggctaccgattggcgctccacatcgagccaaagggcatt
cgcattctcactcgtggcggccatgactggacccgtcgatttccgacgatcgccgcgcgg
gcaagagaactcggtgtgtcgagctgcattctcgacggagaagccgtcgtcctcgatgaa
gagggtcgctcggacttcggagcgttgcagcgctcgctcggcggcaggggcggcaagcgg
atctcgaccgaatccatattctacgccttcgatctgttgtatctcgacggtcacgacctg
acgcgcacggaactgtcggtgcgccgtcatttactggaagatctgatccccgcggccgac
ggtggcgccattcggttctcgcaagaactggatttgggtggcgaggaactgctcgagcac
gcatgtcgtctgggcatggaaggcatcatcgcaaagcgcacggacagtccttaccgcagt
ggccgcctcggggattggcagaagatcaaatgtgttcagagcgaaagcttcatgatcgtc
ggttacgaggaatccgccagcacccgcggcgggctcggcagtctgttgcttgcgggtcga
aagggtcacgactggatctatgtcgggtccgtcggcacggggttcaatcgaaccgaggcg
gaatatttgcgcaagacgttgaaccgcctccaaacgaaaaaaccgatcgtgccgctgaaa
gggaagcggcttgtcttttcccagccgaccctcatcgctgaaatcgagtttcgcggctgg
acgcgtgagggcagcctacgccacccctcatataaggggctgcgcgagatccaggataat
gctgccgtcttcgatatggctgatggcccggctgcgatcagatga
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