Cupriavidus pinatubonensis JMP134: Reut_A0888
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Entry
Reut_A0888 CDS
T00268
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
reu
Cupriavidus pinatubonensis JMP134
Pathway
reu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
reu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Reut_A0888
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
reu03021
]
Reut_A0888
Transcription machinery [BR:
reu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Reut_A0888
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
Motif
Other DBs
NCBI-ProteinID:
AAZ60267
UniProt:
Q474B6
LinkDB
All DBs
Position
1:967430..969781
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AA seq
783 aa
AA seq
DB search
MTKASTSARESGKSASTSGKVAASAPVKGKSITVAKQQNTEVESKQTAAAAGAKSASAKA
GATAPAPKARAASPAAVASERPAAPAVKPEPKKRGRKPKAELQRDESTTDDVTEEFFEND
TPAAAPAAAPKTEKQKAKDRKAKEKALLKEFASTQQGTEEELELRRQKLKALIKLGKSRG
YLTYAEINDHLPDDMVDSETIDTLVATLNDIGIAVYEQAPDAETLLLNDNAPSATSEEEA
EEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEAGLKDMVMAISA
CPVTISEILANAERVASDEIKIDEFVDGLIDPNADEMAQEAAGASAADEEDLESDEDEES
DEDEEDDDAAGAGASARQLEELKLSALEKFRVIAEQFDKMRRAFEKEGYNSKPYVKAQEA
IQAELMGIRFTARSVERLCDTLRGQVDEVRKLERSILNIVVDKCGMPRSDFVARFPGNET
NLDWVGTIVADGKPYSTIVERNVPAVHELQQKLIDLQSRVVLPLKELKGVNRKMAEGEKR
AREAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA
TWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGNEPDPATLAEKMEMPE
DKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNTLAPAEAALHGSMRDVVKDVLDSL
TPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFL
EGN
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaggcctcgacttcggcacgcgagagcggcaagagcgccagtacgagcggcaag
gtcgccgcatctgcaccagtgaaaggcaagagtatcaccgtggcgaaacagcagaatacc
gaagtcgaaagcaagcagacggcagcagcagccggtgccaagagcgcaagcgccaaggca
ggtgcgactgcgccggcacccaaggcacgcgccgcttctcccgccgccgttgcatccgag
cgtcccgcagcgccggcagtcaagccggaaccgaaaaagcgtggccgcaagccaaaggcg
gagttgcagcgcgacgagagcacgactgacgacgtgactgaagagttcttcgagaacgac
acgcccgcagcggcgcctgccgccgcgccgaagaccgaaaagcagaaggccaaggaccgc
aaggccaaggagaaggcgctgctgaaggagttcgcctcgacccagcagggcacggaggaa
gagctcgagctgcgtcgacagaagctcaaggcgctgatcaagctgggcaagtcgcgcggc
tacctgacctacgccgaaatcaacgatcacctgccggacgacatggtcgattcggagacg
atcgacacgctcgtcgccaccctgaacgacatcggcattgccgtgtacgaacaggcgccg
gacgccgaaacgctgctgctcaacgacaacgcgccgtccgccaccagcgaggaagaggct
gaggaagaagccgaagccgcgctgtcgaccgtcgactccgaattcggccgcaccaccgac
cccgtgcgtatgtacatgcgcgaaatgggcacggtggagctgctcacgcgcgaaggcgaa
atcgtgatcgccaagcgtatcgaggcgggcctgaaggacatggtgatggccatttccgcg
tgcccggtcacgatctcggaaattctggccaacgccgagcgcgtcgccagcgacgaaatc
aagatcgacgaattcgttgatggcctgatcgacccgaacgccgatgaaatggcccaggaa
gccgcgggtgcttcggccgcggatgaagaagacctggaatccgacgaggacgaagagtcc
gacgaggacgaggaagacgacgacgctgccggcgccggtgcctcggcacgccagctcgaa
gagctgaagctgtccgcactcgagaaattccgcgtcatcgccgagcagttcgacaagatg
cgccgcgcgttcgagaaggaaggctataactccaagccttacgtgaaggcgcaggaagcc
atccaggccgagctgatgggcatccgctttaccgcgcgcagcgtcgagcgcctgtgcgac
acgctgcgcggccaggtcgacgaagtgcgcaagctcgaacgctcgatcctgaatatcgtg
gtcgacaaatgcggcatgccgcgctcggattttgtcgcgcgcttcccgggcaacgaaacc
aacctcgactgggttggcaccatcgtggccgatggcaagccctacagcaccatcgtcgaa
cgcaacgtgccggccgtgcatgaactgcagcagaagctgattgacctgcaatcgcgcgtg
gtgctgccgctcaaggaactcaagggcgtcaaccgcaagatggccgagggcgaaaagcgc
gcccgcgaagccaagcgcgagatgaccgaggccaacctgcgcctggtgatctcgatcgcc
aagaagtacaccaaccgcggcctgcagttcctcgatctgatccaggaaggcaacatcggc
ctgatgaaggcggtggacaagttcgaataccgccgcggctacaagttctcgacgtatgcc
acgtggtggatccgccaggccatcacgcgttcgatcgccgaccaggcgcgcaccatccgt
atcccggtgcacatgatcgagacgatcaacaagatgaaccgcatctcgcgccagatcctg
caggaaaccggcaacgagccggatccggcaacgctggccgagaagatggagatgccggaa
gacaagatccgcaagatcatgaagatcgcgaaggaaccgatctccatggaaacgccgatc
ggtgacgacgacgactcccatctgggcgactttatcgaggacaccaacacgctggccccc
gcagaagcggccctgcacggctccatgcgcgacgtcgtcaaggacgtgctggactcgctg
acgccgcgcgaagccaaggtgctgcgcatgcgcttcggcatcgaaatgagcaccgatcac
acgctggaagaggtcggcaagcagttcgacgtcacccgcgaacgtatccgccagatcgaa
gccaaggcattgcgaaagctgcgccacccgagccgctctgataagctcaagagtttcctg
gaaggcaactaa
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