Cupriavidus pinatubonensis JMP134: Reut_B5079
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Entry
Reut_B5079 CDS
T00268
Name
(GenBank) ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
reu
Cupriavidus pinatubonensis JMP134
Pathway
reu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
reu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Reut_B5079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
reu03400
]
Reut_B5079
Enzymes [BR:
reu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Reut_B5079
DNA repair and recombination proteins [BR:
reu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Reut_B5079
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AAZ64427
UniProt:
Q46R07
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All DBs
Position
2:1817933..1820638
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AA seq
901 aa
AA seq
DB search
MAKTTRQTPDDTRGTRSTRTAEPARKRPADALGKYRQMRDFAATPEPGGTRQRARATPKA
KRAGTLSFVIQKHAARRLHYDFRLELDGTLKSWAVPKGPSLDPADKRMAVHVEDHPLDYA
GFEGVIPPGHYGAGTVIVWDRGIWVPDGDADAAYRAGKLKFELRGEKLHGHWTLVRMHGS
RQKEQDAWLLIKERDDAAVPASEFDVTEALPDSVLAGTSAARKTTGRRAATNATKPGNGA
KDSTKDSARTKPLPLPRRATAAALPLALSPQLATLVERAPPDADAWRYEIKFDGYRMLAR
IDGDDVRLFTRQGHDWTSRLKTLAREVRALGLPDGWLDGEIVVLGKHGETDFQALQNAFE
TSHVESIQYFVFDLPFYAGHDLRKAPLSERRALLRRLFENNTGTRLRFSEEFEAAPDEML
DAACRMKLEGVIGKRIDAPYVSTRSNTWIKLKCTQRQEFVIGGFTEPKGSRQGLGSLLLG
VHDSAGRLRYAGNVGTGFDTRSLASLREQLDAQRTDKAPFHELPSSIKGLWVRPRLVAEV
SFGSWTREGRVRHAVFHGLRSDKPASAVSVEKPAAPAGRKTAATTAARSAPATTRKGKPT
AANGKVAISHSERVIDTASGLTKGDLVRYYESAAPLMLPHLRGRPIAMVRAPAGVAGQQF
FQRHGDTLKIDGVNVLDPDLWPGHPALLEIVSEHALVAAAQLNVVEFHTWNANKRSMDRP
NRIIFDLDPGEGVPWPHMREAAALMKAWLDELGLASFLKTSGGKGLHVVVPLTPRAGWDE
VKEFAHGVVLHMAVTIPQRFVAKSGAGNRIGKIFIDYLRNGVGATTAAAFSARARPGLGV
SVPLAWDELDGLEASDQWTVANVAPRLDELARHDPWDTYADTRQTITRAATRLARAGRSK
P
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atggccaagaccacgcgccagacccctgacgacacccgcggcacgcgtagcacccgaact
gcggagcccgcgcgcaagcgcccggccgacgcgctcggcaagtatcgccagatgcgggat
ttcgcagccacgcccgaacccggcggcacgcgccagcgcgccagggcaacgccaaaggca
aagcgcgccggcaccttgtccttcgtcatccagaagcacgctgcgcggcggttgcattat
gacttccggctggaactcgacggcacgctgaaaagctgggccgtgccaaagggtccgagc
ctggaccccgccgacaagcgcatggcggtgcatgtggaagaccatccgctcgactatgcg
ggcttcgagggcgtgatcccgccgggccactacggcgctggcacggtgatcgtgtgggat
cgtgggatctgggtgcccgacggcgatgccgatgcggcctatcgcgccggcaagctcaag
ttcgagttgcgcggcgaaaagctgcatggccactggacgctggtgcgcatgcacggcagc
cggcagaaggagcaggatgcctggctgctgatcaaggagcgcgacgatgcggcggtgccc
gcatccgaattcgacgtgaccgaagcgctgcccgacagcgtgctggccggcacatcggcc
gcgcgcaagaccaccgggcgaagggccgctacgaacgctacgaagcccggcaacggcgcc
aaggacagcaccaaggacagcgccagaaccaagcccttgccgctcccacgtcgcgccact
gccgcagcactgccgctcgcgctgtcgccgcaactggccacgctggtcgagcgagcgccc
cccgatgccgatgcatggcgctacgagatcaagttcgacggctaccgcatgctggcccgt
atcgacggcgacgacgtgcgcttgtttacgcgccagggccacgactggacatcgcgcctc
aagacgctcgcgcgcgaagtgcgcgcgctcggattgcccgatggctggctcgatggggaa
atcgtcgtgctcggcaagcacggcgagaccgatttccaggccttgcagaatgccttcgag
acgtcgcacgtggaatcgatccagtacttcgtcttcgacctgccgttctatgccggccac
gacctgcgcaaggcgccgctgtccgaacggcgcgcgctgctgcggcgcctgttcgagaac
aacaccggcacacgcctgcgcttcagcgaggaattcgaagccgcccccgacgaaatgctc
gacgctgcctgtcgcatgaagctcgaaggcgtgatcggcaagcgcatcgacgcgccgtat
gtcagcacgcgcagcaacacgtggatcaagctcaaatgcacgcagcgccaggagttcgtg
atcggcggctttaccgagcccaagggcagccgccagggtctcggctccctgctgctcggc
gtgcacgacagcgccgggcgcctgcgttatgcgggcaatgtgggaacggggttcgatacg
cgctcgctggccagcctgcgcgaacagctggatgcgcagcgcacggacaaggcgcccttc
catgagctgccctcctcgatcaaggggctgtgggttcggccgcggctcgtggccgaggtg
tcgttcggatcgtggacgcgcgaaggccgcgtgcgccatgccgtgttccatggcttgcgc
agcgataaacccgccagcgcggtgtccgtggaaaagcccgccgcacccgccggccgcaag
acggcggccacaaccgcagccaggagcgcgccagccaccacacgcaagggcaaacccacg
gcggcgaacggcaaggtcgccatcagtcactcggagcgcgtcatcgataccgccagcggg
ctgaccaagggagacctggtgcgctactacgaaagcgcggcgccactgatgctgccgcat
ctgcgcggccgccccatcgccatggtgcgggcgccggccggcgtcgccggccagcagttt
ttccagcggcatggcgacacgctaaagatcgacggcgtcaacgtgctcgatccggacctg
tggccgggtcatccggcgctgctcgagatcgtctcggagcacgcactggtggccgcggcg
cagcttaatgtggtggagttccatacctggaatgccaacaagcgcagcatggaccggccc
aaccgcatcatcttcgatctcgaccccggggagggcgtgccgtggccgcacatgcgcgaa
gccgcggcgctgatgaaggcgtggcttgacgaactcgggctcgccagtttcctgaagacc
agcggcggcaagggcctgcacgtggtggtgccgctgacaccgcgcgcgggctgggatgag
gtcaaggagtttgcccacggtgtggtgctgcacatggccgtgacgattccgcagcgcttc
gtggccaagagcggcgcgggcaaccgcattggcaagattttcatcgattacctgcgcaat
ggcgttggcgccacgacggccgcggcattctccgcgcgggcgcgccccggcctgggcgtg
tcggttccgcttgcgtgggacgagctcgacgggctcgaggcctccgaccagtggaccgtc
gccaatgtggcgcctcgcctggacgagctggcacgccacgacccctgggacacttatgcg
gacacccgccagaccatcacgcgcgctgccaccaggctggctcgcgccggaaggagcaag
ccatga
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