Rhodococcus erythropolis CCM2595: O5Y_21290
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Entry
O5Y_21290 CDS
T02806
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rey
Rhodococcus erythropolis CCM2595
Pathway
rey03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rey00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
O5Y_21290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rey03400
]
O5Y_21290
Enzymes [BR:
rey01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
O5Y_21290
DNA repair and recombination proteins [BR:
rey03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
O5Y_21290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AGT94081
LinkDB
All DBs
Position
complement(4685140..4687422)
Genome browser
AA seq
760 aa
AA seq
DB search
MATTDRGQITLDGTTVSVTNLGKILYPESGTTKAEVIDYYTRIAAVMLPHVVGRPGTRKR
WPNGVDGQSFFEKNLASSAPQWLTRASLQHSDRVVTYPIFDSVASLAWLGQQAALELHVP
QWRFDGSERGPATRLVFDLDPGEGVGLAECAEVARSIRDLVATLGWTAYPVTSGSKGIHL
YVPLDRALDGSGASTVAKQIATGLEKLHPDLVTATMARNVRAGKIFVDWSQNNAAKTTIA
PYSMRGRDQPYVAAPRSWDELDDPKLRHLLFDEVLERVESDGDLLGDLDPPVSAAVADTL
THYRNKRSADRTPEPIPAAVTIETAGNTFVIQEHHARRLHYDVRLERDGVLVSWAVPKGV
PTSAGENRLAVHTEDHPLEYATFSGTIPKGEYGGGSMTIWDSGTYETEKWREDEVIVRLS
GERVQGRFALIRTKGDQWLMHLMKDQNASFGTEFPKNLEPMLATAGTLEGLDPQEWAFEG
KWDGIRVILEYHSGTMSLRSRAGNDKTRDYPALAGLAEVLDGHDVVLDGEVVAYNDAGVT
DFGLLQRGGEPVFLAFDLLYLDGVSLLRKSYSDRRTVLNALAGKVGELEVPPQIEGTAEN
ALEVSTDAGWEGIVAKRRASVYLPGRRGASWIKVKNWRTQEVVIGGWRTGQGNRAQGIGA
LLMGIPGEDGLTYVGRVGTGFSDRDLESLLAVLEPLRQKESPFEEELPADDRKGAVWVRP
ELVGEARFMDWTATGRLRHPSWRGLREDKKPGDVVRETRQ
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgacggatcggggtcagatcactctcgacggcacaaccgtgtccgtgaccaat
ctgggcaagatcctctaccccgagagcggcaccacgaaggccgaagtcatcgactactac
acccgtatcgccgcagtcatgcttccgcatgtcgtcggtagacctggtactcgtaagcgt
tggcccaacggtgtggacggtcagtccttcttcgagaagaacctggcgtcgtctgccccg
cagtggctcacgcgtgcgtcgctgcagcattctgatcgcgtcgtcacttacccgatcttc
gattccgttgcatccctggcgtggctggggcaacaggcggcactcgaattacacgttccc
caatggcgattcgacggttccgagcgtggtccggcgacacgactggtattcgatctcgac
ccgggcgaaggcgtcggattggccgagtgcgccgaggtggcgaggtcgattcgagatctg
gtcgcaactctggggtggactgcctatccggtaaccagtggtagcaagggaatccacctc
tacgtaccactggatcgagccttggacggcagtggtgcgtcgactgtcgccaagcagatc
gccaccgggctcgagaagcttcacccggatctcgtcaccgcgacgatggcgcgaaatgtc
cgggcaggcaagatcttcgtggactggagtcagaacaacgcagccaagaccaccattgcg
ccgtattcgatgcgcggccgcgatcaaccctatgttgccgcgccacgcagttgggacgaa
ctcgacgatccgaaactgcgccacctgctgttcgacgaggttctggagcgcgtcgaatcc
gacggtgatctgctgggcgatctggatccgccggtctcggcggctgtagccgatacgttg
acgcactatcgcaacaagaggtcggccgaccggacaccggagccgatccctgctgcggtg
accatagagacagcgggcaatacctttgtgattcaagaacatcacgccagacgattacat
tacgacgttcgcctcgagcgggatggtgtgctcgtgtcctgggcagtcccgaagggtgtg
ccgaccagtgccggagaaaatcggttggccgtgcacaccgaggatcatccgctcgaatac
gccacattctcgggcacgattccgaaaggggagtacggcggaggttcgatgacgatctgg
gattccgggacatacgagaccgagaagtggcgcgaagacgaggtgatcgtgcgcttgagt
ggggagcgggtgcagggacgcttcgcgctgatccggacaaagggtgatcagtggttgatg
catctgatgaaggatcagaacgcgagtttcggaacggagtttcccaagaatctcgagccg
atgctcgccaccgctggaacgctcgaaggtctcgacccgcaggagtgggccttcgaagga
aagtgggacgggattcgagtgattctcgaatatcattcgggcacaatgtcgcttcgcagt
cgcgcgggtaacgacaagacccgggactatccagcccttgccgggttggccgaggtgctg
gacggtcatgacgtggttctcgacggtgaagtggtggcgtacaacgacgcgggagttaca
gatttcggcctcctccagcgaggtggggaaccggtgttcctggccttcgatcttctgtac
ctcgacggagtgtctttgctgcggaagtcctattcggatcgccgcaccgtgttgaatgcg
ttggcgggcaaggtcggtgagctcgaggtaccaccgcagatcgagggcacggcggagaac
gccttggaggtgagtaccgatgccgggtgggaagggattgtcgcgaaacgtcgtgcatcg
gtctaccttccagggcggcggggggcgagttggatcaaggtgaagaactggcgcacccaa
gaggtggtgatcggtgggtggcgcaccgggcagggcaatcgagcgcaggggatcggggcg
ctgctcatgggaattccgggtgaggacggattgacctacgtggggcgcgtcggtaccgga
ttcagcgatcgtgatttggagtcactgcttgcggtgctggaaccgttgcgtcagaaggaa
agtccgttcgaggaggaacttccagcagatgaccgcaagggtgcggtgtgggtgaggcct
gaactcgtcggtgaggcgcggttcatggattggacggcgaccggacgccttcgccacccg
agttggcggggtctgcgggaggacaagaagccgggcgacgtggtgcgggaaacaaggcaa
taa
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integrated database retrieval system
