Rhinolophus ferrumequinum (greater horseshoe bat): 117014478
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Entry
117014478 CDS
T07722
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
rfq
Rhinolophus ferrumequinum (greater horseshoe bat)
Brite
KEGG Orthology (KO) [BR:
rfq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rfq03000
]
117014478 (RC3H1)
04121 Ubiquitin system [BR:
rfq04121
]
117014478 (RC3H1)
Transcription factors [BR:
rfq03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
117014478 (RC3H1)
Ubiquitin system [BR:
rfq04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117014478 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_2
FYVE
zf_CCCH_4
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
zf-RING_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
117014478
NCBI-ProteinID:
XP_032948313
Ensembl:
ENSRFEG00010015337
LinkDB
All DBs
Position
22:complement(8779642..8836336)
Genome browser
AA seq
1132 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSAAILPDE
GAVDLPSRKPPAMPNGIVSAGSTVTQLIPRGTDPSYDSSLKPGKIDHLSSSAPGSPPDLL
ESVPKSISALPVNPHPVPPRGPTDLPPMPVTKPLQMVPRGSQLYPAQQADVYYQDPRGAA
PPFEPAPYQQGMYYTPPPQCVSRFVRPPPSAPEPGPPYLDHYPPYLQDRVVNSQYGTQPQ
QYPPMYPPHYDGRRVYPAQSYPREEIFRESPIPIEIPPAAVPSYVPDSRERYQQMEGYYP
VAPHPTQIRPPYIREPPYSRLPPPPQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSP
TLPPSFHQEEFLDEDLKGPGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAPGGVEM
MNVESKGMRDQRLDHQRRATETSDDDLIPFGDRPTVSRFGAISRTSKTIYPSAGPMQAMA
PQGAPTKPINISDYSPYGAHSGWGGSPYSPHQNIPSQGHFSERERISMSEVASHGKPLPS
AEREQLRLELQQLNHQISQQTQLHGLEAVSNRPVLQREASALAGQSQPPPPPPKWPGMIS
SEQLSLELHQVEREIGKRTRELNLENQCSLDMKSKLNTNKQAENGQPEPQNKVPAEDLTL
TFSDIPNGSALTQENISLLSNKTSSLNLSEDPEGGGDNNESQRPSVAPSSAP
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacagtggacggattttctttcctgcccaatttgcactcagact
tttgacgaaacaattcgaaagcccatcagtttgggttgtggccatactgtctgcaagatg
tgcctgaataaactccaccgcaaagcttgcccatttgaccagaccactatcaacacagac
attgagcttcttcccgtgaactcagcgttgctgcagctggtgggtgctcaggtccctgag
cagcagcccattactctgtgtagtggggtggaagatacaaagcattatgaggaagccaag
aagtgtgtagaagaattagcattatacctgaaaccactcagcagtgctcgaggagtgggt
ctgaatagcacgactcagagtgttctgagtcgcccaatgcagaggaagctggtgactctg
gtccactgccaactagtggaagaagaaggcaggattcgtgccatgcgggcagctcggtct
ttaggtgaaagaacagttacagaactcattctccagcaccagaacccccaacagctctct
tccaacctttgggcagcagtcagggctaggggctgccagttccttggaccagcaatgcag
gaggaagctctaaagctggttctcttggccttagaagatggttctgctttatcaagaaaa
gtattggttctctttgtggtgcaaaggttggagccccggtttcctcaagcctctaaaact
agcattgggcatgttgtccagcttctttacagagcctcctgcttcaaggtcaccaaacgt
gatgaagattcttctttgatgcagctgaaagaagaatttagaacctatgaagctctgcgg
cgagaacatgactcccagatagtgcagattgctatggaagcaggcttacggattgcacca
gaccagtggtcctctttgctctatggagaccagtctcacaagtctcatatgcagtccatt
attgacaagttgcagaccccagcctcttttgcacaaagtgttcaggaactaactattgct
cttcagcggactggagatccagcaaacttgaaccgcctgagaccccatttggagctatta
gcaaacattgacccaagtccagatgctcctcctcctacttgggaacagctagaaaatggg
ctggttgctgtgcgtacagtggtacatgggctggttgattatatccagaaccacagcaaa
aaaggagcagatcaacagcagcctccacagcatagcaaatataaaacatacatgtgtcga
gatatgaagcagagaggaggatgccctcgtggggccagctgtacatttgcacactcacag
gaggaactggaaaaatttcgtaaaatgaacaaacgcctggtccccaggagacccctgagt
gcctctttaggtcagcttaatgaagtgggcctgccttcagccgccatccttccggatgaa
ggtgcagtggatctgcccagcagaaaaccccctgctatgccaaatggaattgtatcagca
gggagtacggtaacccagctgattccccgagggacagaccccagctacgactccagcctg
aagccaggaaagatagatcatctgagcagtagtgcccctggatctcctccggacctgtta
gaatctgtccccaagagtatttctgccttacctgtgaatccgcaccctgtacctccaagg
gggccaacagacctgcctcctatgcctgtcaccaaaccacttcagatggtcccacggggt
tcccagctatatccagcacagcaggcggatgtgtactatcaggaccctcgaggagcggct
ccaccctttgaaccagcaccttatcagcagggtatgtactatactccaccgccacaatgt
gtgtctcgctttgtccgacctccaccatctgctcctgaaccggggcctccctacttggat
cattacccaccctacctccaagatcgtgtagttaactcgcaatatggcacacagccacaa
caatacccacctatgtatccaccacactatgatggccgtcgagtataccctgctcagtca
tatccaagagaggagattttccgggagagccctatacccattgagattccacctgcagca
gtaccatcctatgtaccagattccagagaaagataccagcagatggaggggtactaccca
gtggcacctcatcccactcagatcagacctccgtacatcagagagcctccttatagccga
cttcctcctcctccccagccccatcctagtctagatgagctacatcgaagacgaaaggaa
ataatggcccaactagaggaaaggaaagttatctctccacctccttttgcaccttcacca
acattgcctcctagcttccatcaagaggaatttttggatgaagacttgaagggacctggg
aaatacaaaggaaatgattatagccagtactctccctggtcatgtgacaccattggctcc
tacattggaaccaaagatgcaaaacccaaagatgttgtggcaccaggaggtgtggagatg
atgaatgtagagagtaaaggaatgagagaccagcgattggatcatcagagaagagcaaca
gaaaccagtgatgatgacctcatcccatttggagaccgaccaacagtatctcggtttggc
gccatctctcgaacttccaaaacaatatatccgagtgctggcccaatgcaggctatggca
cctcagggagctcccacaaaacctattaacatctcagattatagtccgtatggagcccac
agtggctggggcggttctccatattcccctcatcaaaacataccttctcagggacacttc
agtgagagggagagaatatccatgtcagaagtggccagtcacggaaaaccccttccgtct
gctgagagggaacagctgcgactagaattgcagcagctaaaccatcagattagccaacag
acacagctacatggactagaggctgttagtaacaggccggtgttgcagcgggaggcgagc
gccctggcaggccagtcacagcccccaccaccacctccaaaatggcctggaatgatctca
agtgagcagttgagcttggaactgcaccaggtggaaagggaaatcgggaagagaacccgg
gaactcaatctggagaaccagtgttctctggatatgaaaagcaaattgaatacaaataag
caagcagaaaatggacaaccagaaccacaaaataaggttccagctgaggaccttacattg
acattcagtgatataccgaatggatcagccttgacccaagaaaatatcagcctcctgtca
aacaagaccagctctctgaacctgtcagaggatccggagggaggaggagacaacaatgag
tcccagagacccagcgttgcacccagttctgctccctaa
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