Rhinolophus ferrumequinum (greater horseshoe bat): 117021789
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Entry
117021789 CDS
T07722
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
rfq
Rhinolophus ferrumequinum (greater horseshoe bat)
Pathway
rfq04151
PI3K-Akt signaling pathway
rfq04510
Focal adhesion
rfq04512
ECM-receptor interaction
rfq04820
Cytoskeleton in muscle cells
rfq04926
Relaxin signaling pathway
rfq04933
AGE-RAGE signaling pathway in diabetic complications
rfq04974
Protein digestion and absorption
rfq05146
Amoebiasis
rfq05165
Human papillomavirus infection
rfq05200
Pathways in cancer
rfq05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
rfq00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
117021789 (COL4A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117021789 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117021789 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117021789 (COL4A1)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
117021789 (COL4A1)
09154 Digestive system
04974 Protein digestion and absorption
117021789 (COL4A1)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
117021789 (COL4A1)
09162 Cancer: specific types
05222 Small cell lung cancer
117021789 (COL4A1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
117021789 (COL4A1)
09174 Infectious disease: parasitic
05146 Amoebiasis
117021789 (COL4A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
117021789 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rfq04147
]
117021789 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
rfq00536
]
117021789 (COL4A1)
Exosome [BR:
rfq04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117021789 (COL4A1)
Glycosaminoglycan binding proteins [BR:
rfq00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117021789 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117021789
NCBI-ProteinID:
XP_032961047
Ensembl:
ENSRFEG00010008039
LinkDB
All DBs
Position
4:complement(53415514..53562682)
Genome browser
AA seq
1669 aa
AA seq
DB search
MGPRLGVWLLLLPAALLLHEERSRAAAKGGCAGSGCGKCDCHGVKGQKGERGLPGLQGVI
GFPGMQGPEGPQGPPGQKGDTGEPGLPGTKGTRGPPGASGYPGNPGLPGIPGQDGPPGPP
GIPGCNGTKGERGPLGPPGLPGFTGNPGPPGLPGMKGDPGEILGHVPGTLLKGERGFPGS
PGTPGLPGLPGLQGPIGPPGYTGPPGPPGPPGPPGEKGQMGLSFQGPKGDKGDQGVSGPP
GVPGQAQVKEKGDFATKGEKGQKGEPGFQGMPGVGEKGEPGKPGPRGKPGKDGEKGERGS
PGFPGDKGYPGAPGREGFKGDKGEMGPQGPPGIVIGTGPLGEKGERGYPGTPGLRGEPGP
KGYPGPPGLQGPPGIPIPGQAGAPGYPGERGEKGDQGFPGLSLPGPSGRDGFQGPPGPPG
PPGQPGHTNGIVECQPGPAGDRGPPGVPGQPGFAGEVGEKGQKGEGCLVCDLTGLRGPPG
PQGPPGEIGFPGQPGAKGDRGFPGRDGLEGLPGPQGVPGLMGQPGAKGEPGEIYYDIQLK
GDKGDPGFPGQPGMPGRAGSPGRDGHPGLPGPKGSPGSIGLKGERGPPGGVGFPGSRGDI
GPPGPPGFGPIGPVGDKGQAGFPGNPGPPGQPGLRGEAGRVVPLPGPPGTQGLPGSPGFE
GPQGDRGFPGTPGRPGLPGEKGAVGQPGIGFPGPPGPKGVDGLPGDVGHPGNPGRPGLTG
LPGNPGVPGQKGEPGVGLPGLKGLPGLPGIPGTPGEKGNIGGPGIPGEHGAVGPPGLQGI
RGDPGPPGLQGPKGSPGVPGIGPPGVMGPPGRPGPPGSSGPPGVKGEKGFPGFPGLDMPG
PKGDKGTQGLPGLTGQSGLPGLPGQQGTPGLPGFPGPKGEMGVMGTPGQPGSPGPAGLPG
LPGEKGDHGFPGSSGPRGDPGFKGDKGDVGLPGQPGSMDKVDMGSMKGQKGDQGEKGQIG
PTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGITGTPGAPGLPGPKGSVGGMGLPG
TPGEKGVPGIPGPQGVPGLPGDKGAKGDKGQAGLPGIGIPGRPGDKGDQGIAGFPGSPGE
KGEKGSAGLPGMPGSPGPKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGTKGEAGLPGK
PGPTGPAGQKGEPGNDGIPGSAGEKGEPGLPGRGFPGFPGSKGEKGSKGDVGFPGLAGSP
GIPGSKGEQGFTGPPGPQGQPGMPGAPGRPVEGPKGDRGPQGQPGLPGPPGPMGPPGLPG
LDGLKGDKGNPGWPGTPGAPGPKGDPGYQGMPGIGGSPGIAGSKGDMGPPGVPGFQGQKG
LPGLQGIKGDQGDQGFPGTKGLPGPPGPPGPYHVIKGEPGLPGPEGPAGLKGLPGPPGPK
GQQGVTGSVGVPGPPGIPGFDGAPGQKGETGPFGPPGPRGFPGPPGPDGLPGSMGPPGTP
SVDHGFLVTRHSQTIDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTM
PFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPIAGDNIRPFISRCAVCEAPAMVMAV
HSQTIQIPPCPNGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG
TCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRRT
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atggggccccggctcggcgtttggctgttgctgctgcccgccgctctcctgctccacgag
gagcgcagccgggccgctgcgaagggtggttgtgctggctctggctgtgggaaatgtgac
tgccatggagtgaagggacaaaagggcgaaagaggcctcccagggttgcaaggtgtaatt
gggtttccgggaatgcaaggacctgaggggccacagggcccaccgggacaaaagggtgat
actggagaaccaggattgccaggaacaaaaggcacaagaggacctcccggagcatcgggt
tatcctggaaacccaggacttccgggtattcctggccaagatggtccaccaggtcctcca
ggtattccaggatgcaacgggacaaagggtgaacgagggcctctggggcccccaggttta
cctggattcactggaaatcccggaccaccagggttaccaggaatgaagggggatcctggt
gaaatcctgggccatgtgcctgggaccctgttgaaaggtgaaagaggatttcctggatcc
cctggaacaccaggcttaccaggattgccagggctacaaggtcccattggccctccagga
tacaccggaccaccgggtcccccaggtcctcctggccctccaggtgaaaaggggcaaatg
ggcttaagttttcaaggaccaaaaggtgacaagggtgatcagggggtcagtggacctcca
ggagtgccaggacaagctcaagttaaagaaaaaggagactttgccactaaaggagagaag
ggtcaaaaaggtgaacctggatttcagggaatgccaggggttggagagaaaggtgaacct
ggaaaaccagggccccgaggaaaacctggaaaagatggtgaaaaaggagaaagagggagt
ccagggtttcccggtgataaagggtacccaggagccccgggccgagagggttttaaggga
gacaaaggtgaaatgggtccccaaggcccacctggaattgtgatcggcacaggacccttg
ggagaaaaaggcgagcgggggtacccagggactccagggttgagaggagagccaggcccc
aaaggttacccagggccaccaggcctgcaaggtcctccaggcatcccgataccagggcag
gctggtgctcctggctaccctggtgaaagaggagaaaaaggtgaccaaggatttccaggg
ctgtctttgccaggaccaagtggaagagatggattccagggccctcctgggccccccgga
ccccctggacagccaggccacacaaatggaattgtggaatgccagcctggaccagcaggt
gatcggggtcctcctggagttccagggcagccagggtttgcgggcgaagttggagagaaa
ggtcaaaaaggagagggttgcctcgtctgtgacttaacaggacttcgtggaccccctggg
ccacagggacccccaggagaaataggtttcccgggacagccaggggctaagggcgacaga
ggtttccctggcagggatggtcttgaagggttgccgggacctcaaggtgtaccagggctg
atgggccagccaggagccaaaggagaacctggtgagatttactacgacattcaactcaaa
ggtgacaaaggagacccaggttttccaggacaacccggtatgccaggcagagcagggtct
cctggaagagatggccatccgggtctgcccggccccaaaggctccccgggttcaatagga
ttaaaaggagaacgcggcccccccggaggagttggatttcccggcagtcgtggtgacatc
ggacctcctgggcctccagggtttggccccattggtcccgttggtgataaaggacaagcg
ggctttccaggaaaccctggacccccaggccagccaggtctcagaggtgaagcaggaaga
gttgtgcctttacctggtccccctggaacacaaggacttccggggtccccaggttttgaa
gggccccaaggtgaccgaggttttcctggaaccccgggaaggccaggcctcccaggagag
aagggtgctgtcggccagcctggcattggatttccagggcccccaggccccaaaggtgtt
gatggcttacctggagatgtgggacatcctgggaatccaggtcgcccaggacttactggc
ttacctggcaacccaggtgtgcccggccaaaagggagagcctggagttggtctgccagga
ctcaaaggattaccaggtcttcccggcattcccggtacacccggggagaagggaaacatc
gggggaccaggcattcccggagagcatggagctgttgggccccccggccttcagggaatc
agaggtgacccaggacctcctggattacaaggtcccaaaggatctccgggagttcctgga
atagggccccctggagtgatgggcccccctggaagaccggggccgccggggtcatcaggt
cctcctggagtgaaaggagagaaaggctttcccggattcccaggcctggacatgccaggc
ccaaaaggagataaagggactcaagggctccctggcctcacggggcagtcggggcttcct
ggtcttcctggacagcaggggacacctggacttcctgggtttccaggtcccaagggagag
atgggcgtcatggggaccccggggcagcctggctccccaggaccagcgggcttgccagga
ttgcctggtgaaaaaggggaccacggctttccaggctcctcgggacccaggggagaccct
ggtttcaagggtgataaaggagatgtcggtctccctggccagcctgggtccatggataaa
gtggacatgggcagtatgaagggccagaagggagaccaaggagagaaaggacaaattggg
ccaactggtgataaaggatcccgaggagaccctggtaccccaggagtacctggaaaggac
ggccaagcagggcatcctgggcagccaggacctaaaggtgatccaggcataaccggaacc
ccaggtgctccaggacttcccggacctaaaggatcagttggtggaatgggcctgccagga
acacctggagaaaagggtgtgcctggaatccccggcccacagggggttcctggcttacct
ggagacaaaggagcaaaaggggataaaggacaggcaggcctacctggcattggaattccc
ggacggcctggggacaagggagatcaaggaatagcaggctttccaggaagtcctggagag
aagggagaaaaaggaagcgctggactcccaggcatgcccgggtctccaggccccaaagga
tcaccaggaagtgttggctatccaggaagccctgggttgcctggagaaaaaggtgacaaa
ggcctcccgggattggatggcattcctggcaccaaaggagaagcaggtcttcctgggaag
cctggccctacaggcccagccggccagaaaggggagcccggcaatgatggaattccaggg
tcggcaggagagaagggtgaaccaggtctacccggaagaggattcccagggtttccgggg
tccaaaggagagaaaggttcaaaaggtgatgtgggtttcccaggattagctgggagccca
ggaattcctggatccaaaggagagcaaggattcacgggtcctccgggaccacaaggacaa
ccagggatgccgggagctcctggccgccccgtggagggacccaaaggagatcgaggcccg
cagggacaacctggcctgccagggcctcctggaccaatggggcctccagggctccctggg
cttgatggactgaaaggtgacaaaggaaatccaggatggccggggactcccggtgctcca
gggcccaagggagatccaggataccaaggcatgcctggaattggtggttctccaggaatt
gcaggctctaagggtgatatgggacctccaggagttccaggatttcaaggtcagaaaggt
ctccctggccttcagggaattaaaggagaccaaggagaccaaggtttccctggaacaaaa
ggtcttccggggccccctggtcccccaggtccttaccatgtcatcaaaggggaaccaggg
ctccctggtcctgagggtcctgcaggactaaaagggcttccgggacctccaggccccaaa
ggacagcaaggtgtgaccggatcggtgggtgtacctggaccgccaggtattcctgggttt
gatggtgcccctggccagaaaggagagacaggaccctttggacctcctggtccaagagga
tttccaggcccaccaggccctgatgggttaccagggtccatgggtcccccaggcacccca
tctgttgatcacggcttccttgtgacccggcacagtcaaacaatagatgatccacagtgt
cctcctgggaccaaaattctttaccatgggtactctttgctctacgtacaaggcaatgaa
cgggcccatgggcaggacttgggcacggctggaagctgcctgcgcaagtttagtacgatg
cctttcctgttctgcaatatcaacaatgtctgcaacttcgcctcccgaaatgactattcc
tactggttgtccacaccggagcccatgccgatgtctatggcacccatcgcgggggacaat
atcaggccgtttattagcaggtgtgcggtgtgtgaggcacctgccatggtgatggccgtg
cacagccagaccattcagatcccgccatgccccaatgggtggtcctcgctctggattggc
tattcctttgtgatgcacaccagtgctggtgctgaaggttctggccaagccctcgcatcc
cccgggtcctgtctggaagagtttagaagtgcgccattcatcgaatgccacggtcgcggg
acttgtaattactatgcaaacgcttacagcttttggcttgccactatagagaggagcgag
atgttcaagaaacccacgccgtctaccttgaaggctggggagctgcgcacgcacgtcagt
cgttgtcaagtctgtatgagaagaacataa
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