Rhinolophus ferrumequinum (greater horseshoe bat): 117025811
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Entry
117025811 CDS
T07722
Symbol
COL4A3
Name
(RefSeq) collagen alpha-3(IV) chain
KO
K06237
collagen type IV alpha
Organism
rfq
Rhinolophus ferrumequinum (greater horseshoe bat)
Pathway
rfq04151
PI3K-Akt signaling pathway
rfq04510
Focal adhesion
rfq04512
ECM-receptor interaction
rfq04820
Cytoskeleton in muscle cells
rfq04926
Relaxin signaling pathway
rfq04933
AGE-RAGE signaling pathway in diabetic complications
rfq04974
Protein digestion and absorption
rfq05146
Amoebiasis
rfq05165
Human papillomavirus infection
rfq05200
Pathways in cancer
rfq05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
rfq00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
117025811 (COL4A3)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117025811 (COL4A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117025811 (COL4A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117025811 (COL4A3)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
117025811 (COL4A3)
09154 Digestive system
04974 Protein digestion and absorption
117025811 (COL4A3)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
117025811 (COL4A3)
09162 Cancer: specific types
05222 Small cell lung cancer
117025811 (COL4A3)
09172 Infectious disease: viral
05165 Human papillomavirus infection
117025811 (COL4A3)
09174 Infectious disease: parasitic
05146 Amoebiasis
117025811 (COL4A3)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
117025811 (COL4A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rfq04147
]
117025811 (COL4A3)
00536 Glycosaminoglycan binding proteins [BR:
rfq00536
]
117025811 (COL4A3)
Exosome [BR:
rfq04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117025811 (COL4A3)
Glycosaminoglycan binding proteins [BR:
rfq00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117025811 (COL4A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117025811
NCBI-ProteinID:
XP_032967926
LinkDB
All DBs
Position
8:complement(9898451..10054623)
Genome browser
AA seq
1671 aa
AA seq
DB search
MRPRTAPRPPTLLLLLLLVLRVAAPVAGKGCVCKDKGRCFCDGTKGEKGEKGFPGPPGSP
GQKGFPGPEGLPGPQGPKGSPGLPGFTGPKGVRGITGLPGFSGPPGLPGTPGLPGPYGLA
GFPGCNGSKGEQGFPGLPGTPGYPGVPGAHGLKGEKGAPAEAEGIELDGKGDPGLPGTAG
FQGLPGLPGFPGPVGPPGPPGFFGFPGAMGPPGLKGHMGDNMVGQKGERGVKGLTGPPGP
PGTVVVTLTGPDSRMDLKGDKGDKGDVGRPGPPGPSGPPGESYGSEKGAPGSPGPQGKPG
KDGAPGFPGTKGAKGNRGFPGLPGEDGVKGWKGDIGLPGFPGPTEYYDAYEEKGDEGIPG
PPGPKGARGPQGPVGPPGVPGRPGSSKPGLRGPPGPPGVKGSKGKQGPPGKNTVGSPGSP
GCPGSPGPPGPPGPPGSPGDTIFRKGPPGDPGLPGHVGPPGIPGVDGRKGEPGLVCTDCP
CVPGPPGLPGLPGLDGLKGIPGERGEAGIKGSPGSPGCAGFPGSPGFPGAPGAPGLKGEK
GETSYPEGQVGDPGDPGPRGQPGRKGFDGIPGTPGLKGSRGPKGEPALTGEKGDRGFPGD
PGSPGSPGPAGPAGPPGYGPEGEPGPKGAKGVPGAPGPPGKAGPPGDSSVLKPVPGPPGP
PGHPGRPGPQGPPGCPGPKGKCGEPGIPGPDGEPGIPGIGFPGPPGPKGDRGFPGTKGSP
GCPGEIGKPGLPGKPGVPGAKGEPGLAMPGEPGTPGFPGERGNSGENGEIGLPGFPGLPG
IPGTGGLDGPQGDPGQPGIPGEKGLPGRCTEGPRGAQGLPGLNGLKGQQGRRGETGLKGD
PGIPGLDRSGIPGEPGPPGKPGHRGDMGPPGQKGYPGNPGFLGPPGEKGSAGMMGFPGNI
GLPGPPGNPGTPGQKGSFGIPGAKGKRGPPGAKGEEGAKGIPGPSQISHLLGDKGEPGLK
GIAGMPGEKGYRGTPGLPGLKGHEGPPGPPGPPGPRGDPGSTGNPGEPGPRGMPGSMGNM
GVPGSKGEKGTSGLPGLPGRPGLPGLHGLQGDKGEPGYSVGTRPGPPGPKGEPGLPGDMG
QKGERGSPGPPGCPGPPGPDGVPGSPGSPGHPGKPGPDGDLGSKGIKGFPGFPGTKGPPG
PPGFPGNPGPMGMRGNQGCDGIPGPAGEKGEPGLLGAFPGPKGKPGAPGAKGDRGDPGLP
GLPGRKGTVGDVGPKGPTGVAGPPGPPGCPGAVIPGQKGNQGPPGSPGNPGEPGPPGPPG
THVKGIKGDKGFMGKTGPRGPPGTVGDPGPPGHMGAPGTPGPPGSRGDPGFQGFPGIKGE
KGNPGFVGSIGPPGRIGPKGPPGARGDPGTLKIISLPGSPGPPGQPGEPGMQGEPGLPGP
PGNVGPCGPRGKSGKDGKPGTPGPPGEKGNKGCKGEQGPPGFDGLPGLKGKPGDTGPPAT
RITMRGFVFTRHSQTTEIPSCPEGTEPLYSGFSLLFVQGNEQAHGQDLGTLGSCLQRFTT
MPFLFCNINDVCNFASRNDYSYWLSTPALMPMDMAPITGRALEPYISRCTVCEGPAIAIA
VHSQSTDIPSCPPGWISLWKGFSFIMFTSAGSEGAGQALASPGSCLEEFRASPFIECHGR
GTCNYYSNSYSFWLASLNPERMFRKPIPLTVKAGELENIISRCQVCMKRRH
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atgcgcccccggacggcgccgaggccgcccactctgctgctgctgctccttctggtgctg
cgcgtggccgcgccggtggcgggcaagggctgtgtctgtaaggacaaaggccggtgcttc
tgtgatgggaccaaaggggagaagggagagaaaggttttcccggaccccctggttctcct
ggccagaagggattcccaggccctgaaggcttgcctggaccccagggacccaagggctct
ccaggacttccaggattcactggtcctaaaggcgtaaggggaataactggattaccagga
ttttcaggtcctcctgggcttccaggcaccccaggcctccctggaccttatggtcttgct
ggtttcccaggatgcaatggttctaagggtgagcaagggtttccaggacttccggggaca
ccaggctacccaggggtcccgggtgctcatggtttgaaaggagaaaagggtgcgcctgct
gaagcagaaggcatagaacttgacggaaaaggtgaccccgggttgccaggaactgcagga
ttccagggtttgccaggcctcccaggatttcctggacctgttggcccacccggccctccg
ggattctttggctttccaggagccatggggcctccaggacttaagggtcacatgggtgat
aacatggtcggacaaaaaggagaacggggtgtgaaaggactaacaggaccccctggacca
ccaggaacagttgttgtgacgctaaccggcccagatagcagaatggacctcaagggcgac
aagggcgacaagggagacgtgggcagacctggacctcctggaccctcaggaccacctgga
gaatcttacggatcagaaaaaggtgctcctggctctcctggcccacaggggaaacctgga
aaagacggtgctcctggttttcctggcactaagggagccaaaggcaacaggggcttccct
gggttacctggtgaggatggcgttaaggggtggaaaggggacatcggcctgccaggattt
cctggtccaacagaatattatgatgcatacgaggaaaagggagatgagggaattccaggt
cctccagggcccaaaggagctcgtggcccacaaggtcctgtgggcccgcctggagttcct
ggaagacctgggtcatcaaagcctggcctcagaggaccccctggaccaccaggcgtgaaa
ggaagtaaagggaagcaaggacccccaggaaagaatacagtagggtctcccgggtcccca
ggttgtcctggttcaccaggccctccagggccgccgggacctccaggatcaccaggagac
accatttttcgcaaaggtccacctggagatcctggacttccaggccatgtggggcctccg
ggaattccaggagtggatgggcgcaaaggggaaccaggcctcgtgtgcactgattgtcct
tgtgtcccggggcccccaggactcccagggttgccggggttagatggcctaaaaggaatc
ccaggagaacgaggggaagctggtattaaaggaagcccagggtccccaggatgtgctggt
tttccaggatctccaggattcccaggtgctccaggtgctccaggacttaaaggagaaaaa
ggtgaaacatcttatccagagggacaagtcggggacccaggggatccggggcccagagga
cagcctggaagaaagggctttgatggaatccctggaactcccggactaaaaggatcacga
gggccgaagggcgaaccggccctcactggtgagaagggggaccggggttttccaggagat
cctggcagccctgggtccccaggacctgcaggaccagctggaccaccaggctatggaccg
gagggagaacctggtccaaagggagccaaaggtgttcctggagcccctggaccacctgga
aaagccggtcccccaggagactccagcgttttgaaaccagtcccagggcccccgggacct
ccagggcacccaggccgtcctggcccccaaggtccacctggttgtcctggacccaaagga
aaatgtggtgagccaggtattcctgggcctgacggtgaaccaggaattccaggaattgga
ttccctgggcctccgggacctaagggagaccgaggttttccaggaacaaaaggatcacca
ggttgtcctggagaaatcggaaagccaggcttacctggaaaaccaggcgtcccaggagcc
aagggagaaccaggactagccatgcctggagaaccaggaacaccaggttttccaggagaa
agaggcaattctggggaaaatggagaaattggactccctggatttcccggtctccctgga
attccaggaactggagggcttgatggaccacaaggggatccagggcagcctggaatacct
ggagaaaaaggactcccaggaaggtgcacagagggtcccaggggagcccaaggacttcca
ggtttaaatggactgaaaggtcaacaaggcagaagaggcgaaactgggctaaagggagac
ccaggtattccgggcttggataggtcaggaattcctggagaacctggaccaccaggaaaa
ccaggtcatcgaggtgacatgggaccacctggtcaaaaaggatatccaggaaatccagga
tttttagggccaccaggtgaaaaaggatcggctgggatgatgggcttccccggaaacatt
ggccttccagggcctcctgggaacccaggcaccccgggccagaagggtagctttggaatt
ccaggagcaaagggtaagagaggacccccaggagccaagggggaagaaggagctaaagga
attcccgggccttctcaaatatcccatttactgggggacaaaggagagccaggcctcaaa
ggaattgcaggaatgcctggtgagaaaggatatagaggcaccccaggattacccggttta
aaaggacacgaagggccacccggaccacctggaccaccaggccccagaggagatccaggt
agcactgggaatcctggagaaccagggccacgtggcatgccaggaagcatggggaacatg
ggagtgccaggttctaaaggagagaagggaacttcgggactcccaggtctacctggaaga
ccaggcctcccaggacttcatggtctccaaggagataagggagagccaggttattctgta
ggtacaaggccaggaccaccaggaccaaagggagaaccaggattgccaggtgacatggga
cagaaaggagaaagagggtcccccggcccacctggatgtcccgggcctcctggacctgac
ggagtccctggaagtcccggaagtcccggccacccaggaaaaccgggtcctgatggcgat
ttggggtctaaaggaatcaaaggcttcccaggctttccaggaacgaaaggccctccaggt
ccaccaggattcccaggaaatcctggaccaatgggtatgagaggtaaccaagggtgtgat
ggaattcctggaccagcaggagaaaagggagagccaggtttgctgggggcatttccaggc
ccaaaaggaaaacctggtgctccaggagccaaaggagacaggggagacccaggcttgcct
ggcctccctggcaggaaagggacagtgggagatgttgggccgaaaggacccactggtgtg
gcaggacccccagggccaccaggatgccctggtgcagtcatccctggccagaaaggaaac
caaggtccaccaggttccccaggaaacccaggtgagcctggtccccccggacctccaggg
actcacgtaaaaggcataaaaggagacaaaggatttatgggcaagactggcccacgaggt
ccacctggaactgtaggagacccagggccaccgggtcatatgggagcaccaggtacccca
ggtccgccagggtccagaggtgatcctggattccaaggatttccaggcataaaaggagag
aagggtaatccaggatttgtgggatcaattggacctccagggcgaattgggccaaaagga
cctccaggtgcacgtggagatccaggcacgcttaagatcatctcccttccaggaagccca
gggccaccgggccaacctggagaaccagggatgcaaggagaacctgggctaccgggacca
ccgggaaacgtaggaccctgtgggccaagaggtaaatcaggcaaggatggaaaaccagga
actcctggaccacctggagaaaaaggcaacaaaggttgtaaaggagagcaaggtccacct
ggattcgatggactgccaggtttgaaggggaaacctggagacaccggaccacctgcaacc
aggataacaatgagaggctttgttttcacccggcacagtcagaccacagagattccctcc
tgtccagaagggacagagccgctctacagtgggttttctcttctttttgtacaaggaaat
gaacaagcccacggacaagatctgggaactcttggaagctgcctacagcgatttaccaca
atgccattcttattctgtaacatcaatgatgtatgtaattttgcatctcgaaatgattat
tcatactggctgtcaacaccagctctgatgccaatggacatggctccaattactggcagg
gccctggagccttatattagcaggtgcaccgtctgtgaaggtcctgcaattgccatagcc
gttcatagccaatctactgacattccctcatgtcctcctggctggatatctctttggaaa
ggattttctttcatcatgtttacaagcgcaggttctgagggagctgggcaagctctagca
tcccctggatcctgcctagaagaattccgagccagtccattcatagaatgtcatggaaga
ggaacatgcaactattattcaaattcctacagtttctggttggcttcattaaacccagaa
agaatgttcagaaaacctattccattaactgtgaaagctggagaattagaaaatataata
agtcgctgtcaggtatgcatgaagagaagacattga
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