Rhodoferax ferrireducens: Rfer_3423
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Entry
Rfer_3423 CDS
T00334
Name
(GenBank) D-alanine--D-alanine ligase
KO
K01921
D-alanine-D-alanine ligase [EC:
6.3.2.4
]
Organism
rfr
Rhodoferax ferrireducens
Pathway
rfr00470
D-Amino acid metabolism
rfr00550
Peptidoglycan biosynthesis
rfr01100
Metabolic pathways
rfr01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
rfr00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Rfer_3423
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Rfer_3423
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
Rfer_3423
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rfr01011
]
Rfer_3423
Enzymes [BR:
rfr01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.4 D-alanine---D-alanine ligase
Rfer_3423
Peptidoglycan biosynthesis and degradation proteins [BR:
rfr01011
]
Precursor biosynthesis
Amino acid ligase
Rfer_3423
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dala_Dala_lig_C
Dala_Dala_lig_N
ATP-grasp_3
ATP-grasp
ATPgrasp_ST
ATP-grasp_4
GARS_A
TTL
CPSase_L_D2
Motif
Other DBs
NCBI-ProteinID:
ABD71132
UniProt:
Q21SX1
LinkDB
All DBs
Position
complement(3807928..3808968)
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AA seq
346 aa
AA seq
DB search
MSQIGINDGASQQPAGTTLGGVAARLGKVAVLMGGASAEREVSLMSGQGVLQALISQGVD
AHAFDPAERDLAELKVEGFSHCFIALHGRFGEDGTVQGALELLGIPYTGSGVMASSIAID
KVMTKRIWRSEGLPTPEWRQVDSAAATSEAFAALGSPMIVKPDREGSTIGLTKVTQIEQC
GAAYALAARHDAMVLCEQFVKGDEVTIPLLGSGAGAHALPVIRIVAPDGNYDYQNKYFTD
TTQYLVPANLPAGEEAHIQQLALKAYQVLGCRGWARVDVMIDARTRAPFLLEINTSPGMT
PHSLVPMAAKAAGVSYPALCLEVLRHATLDYAAAGGDAQQPSTEPA
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaaattggcataaatgacggcgcgagccagcagcccgccgggacgaccctgggc
ggcgtggcggcacgcctgggcaaggtggcggtgctgatgggcggcgcctcggcagagcgt
gaggtgtcgctgatgtccgggcagggcgtgctgcaggcgctgatttcgcaaggggttgat
gcccatgcgtttgacccagccgagcgcgatctggccgagctcaaggttgagggtttttca
cattgttttattgccttgcacggccgctttggtgaagacggcacggtgcagggtgcgctt
gaactgctcggcatcccgtacacgggctccggcgtcatggcctccagcattgccatcgac
aaggtcatgaccaagcgcatctggcgcagcgagggactgccgacgcccgagtggcggcag
gtggacagtgcagcggccacgagcgaagccttcgccgcgctgggcagcccgatgattgtg
aagcccgaccgggaaggctccaccatcggcctgaccaaagtcacgcaaatagagcagtgc
ggtgcagcctatgccctggccgcccggcatgacgccatggtgctgtgtgagcagtttgtc
aaaggtgatgaagtgacgattcccctgctcgggtcgggcgctggcgcccacgcgctgccg
gtgatccgcatcgtggcgccggacggcaactacgactaccagaacaagtacttcaccgac
accacgcaatacctggtgcccgccaacctgccggcaggcgaagaagcccacattcaacaa
ctggcgctcaaggcctaccaggtgctgggatgccggggctgggcccgcgttgacgtgatg
atcgacgcccgcacacgcgcgccctttttgctggaaatcaacacctcgcccggcatgacg
ccgcactcactggtgcccatggcggccaaggccgccggtgtcagctacccggcgctgtgc
ctggaggtgttgcgccatgccacgctggactatgccgccgccggtggcgatgcccagcaa
ccctccacggagcctgcatga
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