Rubrivivax gelatinosus: RGE_26430
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Entry
RGE_26430 CDS
T01803
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rge
Rubrivivax gelatinosus
Pathway
rge03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rge00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RGE_26430 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rge03400
]
RGE_26430 (ligD)
Enzymes [BR:
rge01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RGE_26430 (ligD)
DNA repair and recombination proteins [BR:
rge03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RGE_26430 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BAL95982
UniProt:
I0HSJ5
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All DBs
Position
2785388..2787943
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AA seq
851 aa
AA seq
DB search
MPRTAAPARDPLQHYRERRDFRATPEPGADAVQPGADTGRFVIQKHDATRLHYDFRLELD
GVLLSWAVPKGPSLDPADRRMAVRTEDHPLAYADFEGRIPAGHYGAGQVIVWDRGSWTPL
AEPRAALAAGKLPFELDGEKLHGAWELVRMKPKPGERGENWLLFKKRDAQARPRAEFDVV
AEQPDSVAATAADKPRRRQSRAALALDSVAPKAPQPETLAPQLATLASAAPSSGSWLYET
KFDGYRLLARIRRGVPRLFTRNGHDWTDKLPALAAALKGLGLQSAWIDGELVALGSRGAA
DFNALQNAFDGRDTARLLYYVFDLPYVQGRDLRELALDTRRALLQSLLDEHPLDGVRFSE
ELPAGGAGPLATACERQLEGVIAKRRDAPYRSLRSEAWLKLKCRRRQEFVVAGYTERTNA
SGEIGSLILAVHDADGRLVHAGKVGTGWDTRAARDLFTRLQPLAREAVPFAAGTPSPGRW
SRRAPGLERWVRPEFVVEVEFAEWTPGGSVRHAVFVGVREDKPAAQVLRERAVVPDTAPS
AAPTASSSGRIARVRITHGERIVDKASGLSKLDLLRWYDGVAERMLPHLKARPVALLRAP
QGVGRPVFFQKHAERTEIPGLVLLDPALWPGHEPLMEIRSAEALLSAAQMNTIEFHTWNA
TTRTIAKPDRLVFDLDPGEGVDFAAVREGALLVRTLLDELGLASWLKTSGGKGLHVVVPV
APRVAVDVVKPFSRAVVAHLAEQVPERFVVRSGPANRVGRIFVDWLRNGEGATTVAAFSA
RARPGLGVSIPVSWDALPELRGGDQWTLANAREHLSFEREDPWAAFWTTRQALAPAMRRL
GFDPRAGGDGR
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atgcccagaaccgccgccccggcccgcgacccgctgcagcactaccgcgaacgccgcgat
ttccgcgccacgccggaaccgggcgccgacgcggtgcagcccggcgccgacaccggccgc
ttcgtcatccagaaacacgacgcgacgcggctgcactacgacttccggctggaactcgac
ggcgtgctgctgtcctgggccgtgcccaagggccccagcctggacccggccgaccggcgc
atggcggtgcgcaccgaggaccacccgctggcctacgccgacttcgaaggcaggatcccg
gccggccattacggcgccggccaggtcatcgtctgggaccgcggcagctggacgccgctg
gccgaaccgcgcgccgcgctggccgccggcaagctgccgttcgagctcgacggcgagaag
ctgcacggcgcctgggagctggtgcgcatgaagcccaagcccggcgagcgtggcgagaac
tggctgctgttcaagaaacgcgacgcccaggcgcggccacgcgccgagttcgacgtcgtc
gccgaacagcccgacagcgtcgccgcgacggctgccgacaagccccggcgccggcaaagc
cgcgccgcgctggcgctcgacagcgtcgcgcccaaggcgccgcagcccgagacgctggcg
ccgcagctcgcgacgctggcctcggcggcaccgagcagcggcagctggctctacgagacc
aagttcgacggctaccggctgctggcgcgcatccgccgcggcgtgccgcggctgttcacg
cgcaacggccacgactggacggacaagctgccggcgctggccgcggcgctgaagggcctg
gggctgcagtcggcctggatcgacggcgagctggtcgcgctcggcagccgcggcgccgcc
gatttcaacgcgctgcagaacgccttcgacggccgcgacacggcccgactgctctactac
gtcttcgacctgccctacgtgcagggccgcgacctgcgtgaactggcgctggacacacgc
cgtgcgctgctgcagtcgctgctcgacgaacatccgctggacggcgtgcgcttctcggag
gagctgccggccggcggcgccggcccgctggcgacggcctgcgaacgccagctcgaaggc
gtcatcgccaagcgccgcgacgcgccctaccgctcgctgcgcagcgaggcctggctcaag
ctcaagtgccgacgccgccaggagttcgtcgtcgccggctacaccgagcgcacgaacgcc
agcggcgagatcggcagcctgatcctcgccgttcacgacgccgacggccgcctcgtgcac
gccggcaaggtcggcaccggctgggacacacgcgccgcacgggatctgttcacgcggctg
cagccgctggcccgcgaggccgtgccgttcgccgccgggacgccctcgcccgggcgctgg
agccgccgcgcccccggactggaacgctgggtgcggccggagttcgtcgtcgaggtcgag
ttcgccgaatggacgcccggcggcagcgtgcgccacgcggtcttcgtcggcgtgcgcgaa
gacaagccggccgcccaggtgctgcgcgaacgcgccgtcgtgcccgacacggcgccgagc
gccgcgcccaccgcctcgtccagcggccgcatcgcgcgcgtgcgcatcacgcacggcgag
cgcatcgtcgacaaggccagcggcctgagcaagctggacctgctgcgctggtacgacggc
gtcgccgaacggatgctgccgcacctgaaagcccggccggtggcgctgctgcgcgcgccg
caaggcgtcggacggccggtgttcttccagaagcacgccgaacgcaccgagatccccggc
ctggtgctgctcgatccggcgctgtggcccggccacgagccgctgatggagatccgtagc
gccgaggcgctgctgtcggcggcgcagatgaacacgatcgagttccacacctggaacgcc
acgacgcgcacgatcgccaagcccgaccgcctcgtcttcgacctcgaccccggcgagggc
gtcgacttcgccgccgtgcgcgaaggcgcgctgctggtgcgcaccctgctcgacgagctg
ggtctggcctcgtggctgaagaccagcggcggcaagggcctgcacgtcgtcgtgccggtc
gcgccgcgcgtggcggtcgacgtcgtcaagccgttctcgcgcgccgtcgtcgcccacctc
gccgaacaggtgcccgaacgtttcgtcgtgcgcagcgggccggccaaccgcgtcggccgc
atcttcgtcgactggctgcgcaacggcgaaggcgcgacgacggtggccgcgttctcggcc
cgcgcccgcccggggctgggggtctcgatcccggtgtcctgggacgcgctgccggagctg
cgcggcggtgatcaatggacgctggccaacgcacgcgagcacctgtccttcgaacgcgag
gacccgtgggccgcgttctggaccacgcgccaggcgctggcgccggcgatgcgccgcctc
ggcttcgacccgcgcgccggcggggatggccgctga
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