Rubrivivax gelatinosus: RGE_26430
Entry
RGE_26430 CDS
T01803
Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rge
Rubrivivax gelatinosus
Pathway
rge03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rge00001
]
Genetic Information Processing
Replication and repair
03450 Non-homologous end-joining
RGE_26430 (ligD)
Enzymes [BR:
rge01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RGE_26430 (ligD)
DNA repair and recombination proteins [BR:
rge03400
]
Prokaryotic Type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RGE_26430 (ligD)
SSDB
Motif
Pfam:
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Other DBs
NCBI-ProteinID:
BAL95982
UniProt:
I0HSJ5
LinkDB
Position
2785388..2787943
AA seq
851 aa
MPRTAAPARDPLQHYRERRDFRATPEPGADAVQPGADTGRFVIQKHDATRLHYDFRLELD
GVLLSWAVPKGPSLDPADRRMAVRTEDHPLAYADFEGRIPAGHYGAGQVIVWDRGSWTPL
AEPRAALAAGKLPFELDGEKLHGAWELVRMKPKPGERGENWLLFKKRDAQARPRAEFDVV
AEQPDSVAATAADKPRRRQSRAALALDSVAPKAPQPETLAPQLATLASAAPSSGSWLYET
KFDGYRLLARIRRGVPRLFTRNGHDWTDKLPALAAALKGLGLQSAWIDGELVALGSRGAA
DFNALQNAFDGRDTARLLYYVFDLPYVQGRDLRELALDTRRALLQSLLDEHPLDGVRFSE
ELPAGGAGPLATACERQLEGVIAKRRDAPYRSLRSEAWLKLKCRRRQEFVVAGYTERTNA
SGEIGSLILAVHDADGRLVHAGKVGTGWDTRAARDLFTRLQPLAREAVPFAAGTPSPGRW
SRRAPGLERWVRPEFVVEVEFAEWTPGGSVRHAVFVGVREDKPAAQVLRERAVVPDTAPS
AAPTASSSGRIARVRITHGERIVDKASGLSKLDLLRWYDGVAERMLPHLKARPVALLRAP
QGVGRPVFFQKHAERTEIPGLVLLDPALWPGHEPLMEIRSAEALLSAAQMNTIEFHTWNA
TTRTIAKPDRLVFDLDPGEGVDFAAVREGALLVRTLLDELGLASWLKTSGGKGLHVVVPV
APRVAVDVVKPFSRAVVAHLAEQVPERFVVRSGPANRVGRIFVDWLRNGEGATTVAAFSA
RARPGLGVSIPVSWDALPELRGGDQWTLANAREHLSFEREDPWAAFWTTRQALAPAMRRL
GFDPRAGGDGR
NT seq
2556 nt
+upstream
nt +downstream
nt
atgcccagaaccgccgccccggcccgcgacccgctgcagcactaccgcgaacgccgcgat
ttccgcgccacgccggaaccgggcgccgacgcggtgcagcccggcgccgacaccggccgc
ttcgtcatccagaaacacgacgcgacgcggctgcactacgacttccggctggaactcgac
ggcgtgctgctgtcctgggccgtgcccaagggccccagcctggacccggccgaccggcgc
atggcggtgcgcaccgaggaccacccgctggcctacgccgacttcgaaggcaggatcccg
gccggccattacggcgccggccaggtcatcgtctgggaccgcggcagctggacgccgctg
gccgaaccgcgcgccgcgctggccgccggcaagctgccgttcgagctcgacggcgagaag
ctgcacggcgcctgggagctggtgcgcatgaagcccaagcccggcgagcgtggcgagaac
tggctgctgttcaagaaacgcgacgcccaggcgcggccacgcgccgagttcgacgtcgtc
gccgaacagcccgacagcgtcgccgcgacggctgccgacaagccccggcgccggcaaagc
cgcgccgcgctggcgctcgacagcgtcgcgcccaaggcgccgcagcccgagacgctggcg
ccgcagctcgcgacgctggcctcggcggcaccgagcagcggcagctggctctacgagacc
aagttcgacggctaccggctgctggcgcgcatccgccgcggcgtgccgcggctgttcacg
cgcaacggccacgactggacggacaagctgccggcgctggccgcggcgctgaagggcctg
gggctgcagtcggcctggatcgacggcgagctggtcgcgctcggcagccgcggcgccgcc
gatttcaacgcgctgcagaacgccttcgacggccgcgacacggcccgactgctctactac
gtcttcgacctgccctacgtgcagggccgcgacctgcgtgaactggcgctggacacacgc
cgtgcgctgctgcagtcgctgctcgacgaacatccgctggacggcgtgcgcttctcggag
gagctgccggccggcggcgccggcccgctggcgacggcctgcgaacgccagctcgaaggc
gtcatcgccaagcgccgcgacgcgccctaccgctcgctgcgcagcgaggcctggctcaag
ctcaagtgccgacgccgccaggagttcgtcgtcgccggctacaccgagcgcacgaacgcc
agcggcgagatcggcagcctgatcctcgccgttcacgacgccgacggccgcctcgtgcac
gccggcaaggtcggcaccggctgggacacacgcgccgcacgggatctgttcacgcggctg
cagccgctggcccgcgaggccgtgccgttcgccgccgggacgccctcgcccgggcgctgg
agccgccgcgcccccggactggaacgctgggtgcggccggagttcgtcgtcgaggtcgag
ttcgccgaatggacgcccggcggcagcgtgcgccacgcggtcttcgtcggcgtgcgcgaa
gacaagccggccgcccaggtgctgcgcgaacgcgccgtcgtgcccgacacggcgccgagc
gccgcgcccaccgcctcgtccagcggccgcatcgcgcgcgtgcgcatcacgcacggcgag
cgcatcgtcgacaaggccagcggcctgagcaagctggacctgctgcgctggtacgacggc
gtcgccgaacggatgctgccgcacctgaaagcccggccggtggcgctgctgcgcgcgccg
caaggcgtcggacggccggtgttcttccagaagcacgccgaacgcaccgagatccccggc
ctggtgctgctcgatccggcgctgtggcccggccacgagccgctgatggagatccgtagc
gccgaggcgctgctgtcggcggcgcagatgaacacgatcgagttccacacctggaacgcc
acgacgcgcacgatcgccaagcccgaccgcctcgtcttcgacctcgaccccggcgagggc
gtcgacttcgccgccgtgcgcgaaggcgcgctgctggtgcgcaccctgctcgacgagctg
ggtctggcctcgtggctgaagaccagcggcggcaagggcctgcacgtcgtcgtgccggtc
gcgccgcgcgtggcggtcgacgtcgtcaagccgttctcgcgcgccgtcgtcgcccacctc
gccgaacaggtgcccgaacgtttcgtcgtgcgcagcgggccggccaaccgcgtcggccgc
atcttcgtcgactggctgcgcaacggcgaaggcgcgacgacggtggccgcgttctcggcc
cgcgcccgcccggggctgggggtctcgatcccggtgtcctgggacgcgctgccggagctg
cgcggcggtgatcaatggacgctggccaacgcacgcgagcacctgtccttcgaacgcgag
gacccgtgggccgcgttctggaccacgcgccaggcgctggcgccggcgatgcgccgcctc
ggcttcgacccgcgcgccggcggggatggccgctga
DBGET
integrated database retrieval system
