KEGG   Rubrivivax gelatinosus: RGE_32640Help
Entry
RGE_32640         CDS       T01803                                 

Gene name
dnaL
Definition
(GenBank) ATP dependent DNA ligase DnaL
  KO
K10747  
DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
rge  Rubrivivax gelatinosus
Pathway
DNA replication
Base excision repair
Nucleotide excision repair
Mismatch repair
Brite
KEGG Orthology (KO) [BR:rge00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    RGE_32640 (dnaL)
   03410 Base excision repair
    RGE_32640 (dnaL)
   03420 Nucleotide excision repair
    RGE_32640 (dnaL)
   03430 Mismatch repair
    RGE_32640 (dnaL)
Enzymes [BR:rge01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     RGE_32640 (dnaL)
    6.5.1.6  DNA ligase (ATP or NAD+)
     RGE_32640 (dnaL)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     RGE_32640 (dnaL)
DNA replication proteins [BR:rge03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    RGE_32640 (dnaL)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     RGE_32640 (dnaL)
DNA repair and recombination proteins [BR:rge03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     RGE_32640 (dnaL)
   NER (nucleotide excision repair)
    Other NER factors
     RGE_32640 (dnaL)
   MMR (mismatch exicision repair)
    Other MMR factors
     RGE_32640 (dnaL)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
complement(3483943..3484785)
Genome map
AA seq 280 aa AA seqDB search
MLLTRRDFWAAALACCSLPGRPAEAGSPPAVMLAREARLGVDPAGFLVSEKLDGVRALWD
GRRLRFRSGRDVVAPPGFVARLPPVALDGELWLGRGAFEAVSGLVRRESPDDGRWRALRY
CVFDLPGAPGPFAERARRLADLARGTNAFVAVEQRRVASAGALNVWLDEVVTGGGEGLVL
HRADALWQPGRSDALLKLKPQQDAEAVVVGHVGGQGRLEGRMGALRVRADDGTEFLLGTG
FSDAERAAPPPVGTVVSYRYRGRTAAGVPRFASFLRVREF
NT seq 843 nt NT seq  +upstreamnt  +downstreamnt
atgctgttgactcgacgcgatttctgggccgccgcgctcgcctgctgcagcctgccgggc
cgcccggccgaagccgggtcgccgccggccgtgatgctggcgcgcgaagcgcggctcggc
gtggacccggcgggttttctcgtcagcgagaagctcgacggcgtgcgtgcgctctgggac
gggcgacgcctgcgctttcgcagcggccgcgacgtcgtcgcgccgccgggtttcgtcgcc
cggctgccgccggtggcgctggacggcgaactctggctggggcgcggcgccttcgaggcc
gtctcgggcctggtgcggcgcgagtcgcccgacgatggccgctggcgcgcgctgcgttac
tgcgtcttcgacctgcccggcgctccggggccgttcgccgagcgggcgcgccgcctggcc
gacctggcgcgcggcacgaacgccttcgtcgccgtcgagcagcgccgcgtcgcgtcggcc
ggcgcgctgaacgtctggctcgacgaggtcgtgaccggtggcggcgaaggcctggtgctg
caccgcgccgacgcgctatggcagcccggccgcagcgacgcgttgctcaagctcaagccg
cagcaggacgccgaggcggtggtcgtcggccacgtcggcggccagggccgcctcgaaggc
cggatgggcgccttgcgcgtgcgcgccgacgacggcaccgagttcctgctcggcaccggc
ttcagcgacgccgaacgcgcggcgccgccgcccgtcggcacggtcgtcagctaccgctac
cgcggccgcaccgcggccggtgtgccgcggttcgccagcttcctgcgcgtgcgcgagttc
tga

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