Rhodococcus sp. B7740: NY08_3398
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Entry
NY08_3398 CDS
T03776
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rhb
Rhodococcus sp. B7740
Pathway
rhb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rhb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NY08_3398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhb03400
]
NY08_3398
Enzymes [BR:
rhb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NY08_3398
DNA repair and recombination proteins [BR:
rhb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NY08_3398
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AJW41408
UniProt:
A0A0D5AF48
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All DBs
Position
3509516..3511786
Genome browser
AA seq
756 aa
AA seq
DB search
MATLEIDGRKVSVTNLDKVLFPETGTTKGNIIEYYVAIAPAMLPHLVGRAVTRKRWPNGV
DQSSFFEKNLAASAPDWLDRRSMQHSDRVVTYPLFSTAADLAWLGQQAAIEAHVPQWRFD
GTEAGPATRMVFDLDPGDDVDLARCAEVACEIRDLIGDIGMTAYPVTSGSKGIHLYVPLE
KPLSTSGASTVAKRVATLLEERSPDRVTATMAKAKRTGRVFVDWSQNNGKKTTVAPYSLR
GRALPTVAAPRTWDELEASGLQQLRFEEVLERFQDLGDLLAELDPTVDSAPESSSATDKL
VKYRSMRSADKTPEPIPTATEPQGNNDTFVIQEHHARRLHYDFRLEHDGVLVSWAVPKNI
PVDPKQNRLAVHTEDHPLEYASFSGRIPKGEYGGGDVSIWDSGTYELEKWREDEVIVVLH
GKKATGRFALIRTKGNQWLMHLMKDAPDKPEPKNISPMLATAGDILDLPDDEWSFEGKWD
GFRIIAELTHGSMTLRTRSGNDYTKKFGALQSFADDLAEHDAIVDGEVVVFDDDGVSSFE
KLQNATRDQIRFIAFDLLHLDGTSLLRKKYSDRRRLLELLTTGLDSVLVPPRLTGTAADA
IAESRERGWEGVVAKRTDSVYQPGKRAHTWIKHKNRRTQEIVIGGWRRGQGRRSGGFGSL
LMGIPDGDGLRYVGRVGTGFDDRALDTLAALLAPLEASDSPFSSVLPAADRNGAVWVEPV
LVGEVRYYEATESGHLRHPSWRGLRPDKEPKAVHRE
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atggccaccctcgagatcgatggtcgcaaggtctccgtcaccaacctcgacaaagtgctg
ttccccgaaacggggaccaccaagggcaacatcatcgagtactacgttgccatcgcgcct
gcgatgcttcctcacctcgtgggccgagcggtgacccgtaagcgttggcccaacggcgtg
gaccagtcgtcgttcttcgagaagaacctcgccgcctccgcacccgactggctcgatcgg
cgttcgatgcagcattccgaccgcgtcgtcacctacccattgttctccactgcagccgat
ctggcctggctcggtcaacaggcggccatcgaagcgcacgtgccgcagtggcggttcgac
ggcaccgaagccggacctgccacccgcatggtcttcgacctcgatcccggcgacgacgtg
gatctcgcgcgatgcgccgaagtagcctgcgagataagggatctgatcggcgatatcggg
atgaccgcatatccggtaaccagcggcagcaagggaatccacctgtacgtgccgctcgag
aaaccgctgtcgacctccggcgcgtccacggtcgccaaacgtgttgccacgctgctcgaa
gagcgctcgccggaccgggtcacggccacgatggcaaaggcgaagcgaaccgggagggta
ttcgtggactggagccagaacaacggcaagaagaccacggtcgccccgtactctctccgt
ggacgagcgctccccacggtcgcggcaccacgcacctgggacgagctggaagcatcgggg
ctgcaacagcttcgattcgaagaggtcctcgagcgattccaggacctcggcgatcttctc
gcagagctggaccccaccgtcgactcggcacccgaaagtagttctgccacggacaaactc
gtcaagtaccgcagcatgcgtagcgccgacaagacccccgaaccgataccgaccgccacc
gaaccgcagggcaacaacgacacgttcgtgatccaggaacaccatgcccgacggctgcac
tacgacttccgactcgagcacgacggcgtcctggtctcgtgggccgtcccgaagaacatc
ccggtggacccgaagcagaaccggctggcggtacacaccgaggaccacccactcgaatac
gcgtcgttctccggtcggatacccaagggcgagtacggcggcggcgacgtctcgatctgg
gacagcggaacctacgaactcgagaaatggcgagaggacgaggtcatcgtcgttctgcac
ggaaagaaggcgaccgggcgcttcgccctgatccgcaccaagggcaatcagtggctcatg
catctgatgaaggacgcacccgacaagcccgagccgaagaacatctcgccgatgctcgcc
accgcgggcgacatcctcgatctcccggacgacgagtggtcgttcgagggcaagtgggac
gggttccgcatcatcgcagaactgacgcacggttcgatgacgctgcgcacgcgaagcggt
aacgactacaccaaaaagttcggcgcactccaatctttcgcggatgacctggccgagcac
gacgccatcgtcgacggagaagtcgtggtattcgacgacgacggggtcagtagcttcgag
aaactgcagaacgccacccgtgaccagatccgattcatcgcgttcgatctgcttcacctc
gacggcacgtcactgctgcgcaagaagtactcggatcgacgacggttgctcgaactactg
accaccggactcgactcggtgctggtgccaccgcggctgacggggaccgctgcggacgcc
atcgccgaaagcagagaacgaggctgggaaggcgtcgtcgccaaacgaaccgactccgtc
tatcaacccggcaagcgcgcccacacctggatcaagcacaagaaccggcggactcaggag
atcgtgatcggcgggtggcgtcgggggcagggtcgtcgttccggtgggttcggctcactc
ctgatgggcattcccgacggggacggattgcgatacgtagggcgcgtcggaaccgggttc
gacgaccgtgcgctcgacacgctcgctgccctcctcgcgccactcgaggcgtcggacagt
cccttctcctcggtgctgcccgcggccgatcggaacggagcggtgtgggtcgagccggtg
ctcgtcggcgaggtgcggtactacgaggccacggaatccggccatctgcggcatccgagc
tggcgcggtctccgcccggacaaggaaccgaaggcagtgcatcgggaatga
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