Rhodoferax sediminis CHu59-6-5: EUB48_10640
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Entry
EUB48_10640 CDS
T06165
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rhf
Rhodoferax sediminis CHu59-6-5
Pathway
rhf03030
DNA replication
rhf03410
Base excision repair
rhf03420
Nucleotide excision repair
rhf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EUB48_10640 (ligA)
03410 Base excision repair
EUB48_10640 (ligA)
03420 Nucleotide excision repair
EUB48_10640 (ligA)
03430 Mismatch repair
EUB48_10640 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhf03032
]
EUB48_10640 (ligA)
03400 DNA repair and recombination proteins [BR:
rhf03400
]
EUB48_10640 (ligA)
Enzymes [BR:
rhf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EUB48_10640 (ligA)
DNA replication proteins [BR:
rhf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EUB48_10640 (ligA)
DNA repair and recombination proteins [BR:
rhf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EUB48_10640 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EUB48_10640 (ligA)
MMR (mismatch excision repair)
DNA ligase
EUB48_10640 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EUB48_10640 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
zf-NADH-PPase
DUF2116
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QDL37677
UniProt:
A0A515DBA2
LinkDB
All DBs
Position
complement(2216951..2219023)
Genome browser
AA seq
690 aa
AA seq
DB search
MANPHLFAPPEPGSDAARVEALRRQLHHHAHRYYVLDEPEIPDAEYDRLFRELQALEAAH
PELFSPDSPTQRVGGKPLDQFASVRHAVPMLSLRTETDTEPTGAISFDARVRRELGLTPD
DPPVEYVTELKFDGLAMNLRYEAGTLVQAATRGDGEVGEDVTQNIRTIGQIPLRLPTGVP
HVLEVRGEIFMRRDDFEALNARQRDKGEKTFVNPRNAAAGAVRQLDPAIAAQRPLSFFAY
GLGEVTPAAQGGPEFQTHYELLQTLKSWGFPVAAQVQIAHGAMELVAYHQSIGSQRDHLP
FDIDGVVYKVNNLALQQQLGFVTREPRWAVAHKYPAQEQLTTVLGIEVQVGRTGKLTPVA
KLAPVFVGGVTVTNATLHNEDEARRKDVRIGDTVIVRRAGDVIPEVVSVLPERRPPGAKV
FTMPRHCPVCGSAAVREEGEVDYRCSGGLFCSAQRKQAILHFAQRRAVEIEGLGDKLVDQ
LVDAGVIRTLPDLYRLGLTSLVALDRMADKSAQNIVDALQKSKQTTLPRFLFGLGIRHVG
EATAKALARHFGKLDAVMDATEEQLLQVGDVGPIVASSIRTFFEQPHNREVVEQLRACGV
TWEEGEPAPVAPQPFAGKTFVLTGTLPTLSRDQAKELIESAGGKVAGSVSKKTSYVVAGT
EAGSKLAKAQELEVAVLDEAGLLDLLNARA
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacccccatttgtttgcgccgcccgagccgggttccgacgccgcgcgcgtcgag
gcgctgcgccgccagctgcaccatcatgcgcaccgctactacgtgctcgacgaacccgaa
atcccggacgccgaatacgaccgcctgtttcgcgagctgcaggcgctggaggccgcgcat
cccgaactcttcagtcccgattcgccgacccagcgcgtgggcggcaagccgctcgaccag
ttcgccagcgtgcgccacgccgtgccgatgctgagcctgcgcaccgaaaccgacaccgaa
cccacgggcgccatcagcttcgatgcgcgcgtgcggcgcgagctgggcctgacaccggac
gatccccccgttgaatacgtgaccgagctcaagttcgacggcctggcgatgaacctgcgc
tacgaggccggcacgctggtgcaggccgccacgcgcggcgacggcgaagtgggcgaggac
gtgacgcagaacatccgcaccatcgggcaaattcctttgcgcctgcccactggcgtgccc
cacgtgctcgaggtgcggggcgagattttcatgcgccgcgacgactttgaagcgctcaac
gccagacagcgcgacaagggcgagaagaccttcgtcaacccgcgcaacgcagccgccggc
gcggtgcgccagctcgaccccgcgatcgcggcgcagcggccgctgagcttttttgcctac
ggcctgggcgaagtcacgcccgccgcgcagggcggccccgaattccagacccactacgaa
ctgctgcaaaccctcaaatcatggggttttccggtcgcagcccaggtgcagattgcgcat
ggcgctatggaattagtagcgtatcaccagtccatcggcagccagcgcgaccacctgccg
ttcgacatcgacggcgtggtctacaaggtcaacaacctggcgctgcaacagcaactcggt
tttgtcacgcgcgagccgcgctgggcggtggcgcacaagtacccggcgcaggagcagctc
accacggtgctcggcatcgaggtgcaggtcgggcgcaccggcaagctcacgccggtcgcc
aagctggcgcccgtattcgtcggcggcgtgaccgtgaccaacgcgaccctgcacaacgaa
gacgaggcgcgccgcaaggacgtgcgcattggcgataccgtgatcgtgcgccgcgccggc
gacgtcattcccgaggtcgtgagcgtgctgcccgagcggcgcccgcccggtgcgaaggtt
ttcaccatgccacggcactgcccggtctgcggctccgcggcggtgcgcgaggagggcgag
gtggactaccgctgcagcggcggcctgttctgcagcgcgcagcgcaagcaggccatcctg
cacttcgcgcagcgccgcgcggtcgagatcgaagggttgggcgacaagctggtcgatcaa
ctggtcgatgcgggcgtcatccgcaccttgcccgacctgtaccgccttggcctgacgtcg
ctcgtcgctctggaccgaatggccgacaagtccgcgcagaacatcgtcgatgcgctacaa
aaatcgaagcaaaccacgctgccgcggtttttgttcgggctcggcatccgccatgtcggc
gaggccacggcgaaagcattggcgcgccatttcggcaagctcgatgccgtcatggacgcc
accgaggagcagttgctgcaggtgggcgacgtcggcccgatcgtcgccagcagcatccgc
accttcttcgagcagccgcacaaccgcgaggtggtcgaacagttgcgcgcctgcggcgtg
acctgggaggagggcgagcccgcccccgtggcgccgcagccattcgccgggaagaccttc
gttctcaccggcacgctgcccacgctgagccgcgaccaggccaaggaactgatcgaatcc
gccggcggcaaggtggcgggctcggtcagcaagaaaaccagctacgtggtggccggaacc
gaggcgggcagcaagctggccaaggcgcaggagctcgaggtcgcggtgctcgacgaggcc
ggtctgctggacttgctgaacgctcgggcctga
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