Rhodoferax sediminis Gr-4: EXZ61_01210
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Entry
EXZ61_01210 CDS
T06176
Symbol
dacB
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
rhg
Rhodoferax sediminis Gr-4
Pathway
rhg00550
Peptidoglycan biosynthesis
rhg01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rhg00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
EXZ61_01210 (dacB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rhg01002
]
EXZ61_01210 (dacB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rhg01011
]
EXZ61_01210 (dacB)
Enzymes [BR:
rhg01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
EXZ61_01210 (dacB)
Peptidases and inhibitors [BR:
rhg01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
EXZ61_01210 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:
rhg01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
EXZ61_01210 (dacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S13
Beta-lactamase2
Transpeptidase
Motif
Other DBs
NCBI-ProteinID:
QDL52901
UniProt:
A0A515EJR1
LinkDB
All DBs
Position
complement(259884..261401)
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AA seq
505 aa
AA seq
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MTFLPTLPSRVRRAVAGALRGATSASLLCATFSMAWAQNLPPEAQAALARAKVPEDAVSV
LLVDAQNPNAAPRLNLRTSQPMNPASVMKLVTTYAGLDLLGPAYSWRTPVFVDGTVREGT
LQGNLYIKGQGDPKLVMERLWLLLRRVQGLGIKAIAGDIVLDRSAFDVPDADPASFDGEP
LRPYNASPDALLLNYKALVMTFTPDRSSNTTVVQFDPPLAGVLLQTTVPLSNGDCGDYRG
VLKADFSDPKRIRFTGGYPASCGEKVWPVAYADPKTYAVRAVQGLWQDLGGKLSGSVRLG
TVPAALAAAKPAFETESAPLAEVIRDINKYSNNVMAQQLFLTLGREVPLGTLASTPPREA
GEPAPVPGNFAASRAVVQRWWKERISPQDVPVLDNGSGLSRSERISAQGLGRLLHTAYAS
PWMSELMSSLPITGVDGTLKRVKTRNGGSAHLKTGTLSNVVAVAGYVDGASGKRYVLVVL
INHPNASAARPAIEALVDWAARDGG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgacctttctacccactttgccaagccgggtgcgccgtgctgtagcgggcgccctacgt
ggcgcgacatcggcctccctcttgtgcgcgacgttctccatggcctgggcgcaaaacctg
ccccccgaggcacaagctgcgctggcgcgcgccaaagtgccagaagacgcggtgagcgtg
ctgctggtggacgcccaaaaccccaatgccgcgccgcgcctgaacctgcgcaccagccag
cccatgaacccagcctcggtcatgaagctggtcaccacctatgccgggctcgacctattg
gggcccgcctacagctggcgcacgcccgtgtttgtggatggcaccgtgcgtgagggcacg
ctgcaaggcaatctgtacatcaagggccaaggcgaccccaagctggtgatggagcggtta
tggctgctgctgcgccgggtgcagggcctgggcatcaaagccatcgcgggtgacatcgtg
cttgaccgcagtgcgtttgacgtacccgatgccgatcctgccagctttgacggcgagcca
ctgcgcccctacaacgccagccccgacgcgctcttgctcaactacaaagccctggtgatg
accttcaccccggatcgcagcagcaacacaacggtggtgcagttcgacccacccttggcg
ggcgtgctgctgcaaaccacagtgccgctcagcaatggcgactgcggcgactaccgtggc
gtacttaaagccgatttttccgaccccaagcgcatccgctttaccggcggctacccggcc
agctgcggcgagaaagtctggcccgtggcctatgcggaccccaagacctatgcggtgcgc
gcggtgcaaggcctgtggcaagacctgggcggcaagctctctggcagcgtgcgcttgggc
acagtgccagccgccttggcggcagcaaagcctgcctttgaaaccgaatcggcccctttg
gccgaggtgatccgcgacatcaacaaatacagcaacaacgtgatggcccagcagctgttc
ttaaccctggggcgcgaagtaccgctggggacgctggcgagcaccccaccgcgcgaggcg
ggcgaacccgcccccgtgccgggcaactttgccgccagccgcgccgtggtgcagcgctgg
tggaaagaacgcatcagcccgcaagacgtgccggtgctggacaacggctcaggtctgtcc
agaagcgaacgcatcagcgcccaaggcctagggcgcttgctgcacaccgcgtatgcctcg
ccttggatgtcggagctcatgtcttctctgcccattaccggtgtagacggcacactcaag
cgcgtcaaaacccgcaacggtggcagcgcccatttgaagaccggcaccttaagcaacgtg
gtggcagtggctggctatgtagacggtgccagcggcaagcgctacgtgctggtggtcctc
atcaaccaccccaacgccagcgcagcccgccccgccattgaggcgctggtggattgggcg
gcaagggacggcggttag
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