Sinorhizobium fredii NGR234: NGR_b20140
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Entry
NGR_b20140 CDS
T00888
Name
(GenBank) possible pyridoxal-dependent decarboxylase
KO
K01593
aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:
4.1.1.28
4.1.1.105
]
Organism
rhi
Sinorhizobium fredii NGR234
Pathway
rhi00350
Tyrosine metabolism
rhi00360
Phenylalanine metabolism
rhi00380
Tryptophan metabolism
rhi01100
Metabolic pathways
rhi01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
rhi00001
]
09100 Metabolism
09105 Amino acid metabolism
00350 Tyrosine metabolism
NGR_b20140
00360 Phenylalanine metabolism
NGR_b20140
00380 Tryptophan metabolism
NGR_b20140
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rhi04147
]
NGR_b20140
Enzymes [BR:
rhi01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.28 aromatic-L-amino-acid decarboxylase
NGR_b20140
4.1.1.105 L-tryptophan decarboxylase
NGR_b20140
Exosome [BR:
rhi04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
NGR_b20140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pyridoxal_deC
Beta_elim_lyase
Aminotran_1_2
OKR_DC_1
Aminotran_5
DegT_DnrJ_EryC1
Motif
Other DBs
NCBI-ProteinID:
ACP23461
UniProt:
C3KM25
LinkDB
All DBs
Position
pNGR234b:2060382..2061800
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AA seq
472 aa
AA seq
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MDEATFAKWSRKAADWGAAYRASLRDRPVRAQTAPGDITAEIPASPPQTGESMEAIFADF
EKIIVPGMTHWQHPRFFAYFPANAAPVSVVAEYLVTAMAAQCMLWQTSPAATELETRVLD
WLRQAIGLPGGFAGVIQDSASSATLSAVLVMRERALAWNGNKAGLSANPRLRVYSSDQVH
TSIDRAIWVSGVGEDNLVRIPVQGEHRSMDCAALEAAILRDKAAGYVPAGVIACTGGTST
GACDNIADVVRVARAHDLYVHVDAAWAGSAMICEEFRPLWAGVEEADSVVFNPHKWLGAQ
FDCSAHFIRSPDDLVRTLAIKPEYLKTHGKDGIINYSEWTVPLGRRFRALKLWFLLRFHG
LEGLKGMIRNHVAWAETLAERLGREDGFEIVTKPIFSLFSFRHLGSGDLDAHNLALVNAI
NDDGRIYLTQTRVDGRVVIRFQAGQFDMTEQDADTAFEVITEIANSLGAARR
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagccacgttcgccaaatggtcgagaaaggccgcagactggggagccgcttac
cgcgcttcgcttcgcgaccggccggtgcgcgcgcaaacggcgcccggcgacatcaccgct
gagataccagcctccccgccgcagaccggcgagagcatggaggcgatctttgccgatttc
gagaaaatcatcgttccggggatgacgcactggcagcacccgcgcttcttcgcctatttc
ccggccaatgccgcgccggtttccgtcgtcgccgagtatctggtgacggcgatggccgcc
cagtgcatgctctggcagacgtcacctgccgcaaccgagctcgaaacgagggtgctcgac
tggctgcgccaggcgatcggcctgccgggaggtttcgccggcgtaatccaggattcggcc
tcctccgccaccctgtcggccgtcctcgtcatgcgcgagcgcgcgctggcctggaacggc
aacaaggcggggcttagcgccaatccgagactgcgcgtctattcctcggatcaggttcac
acgtcgatcgaccgcgccatctgggtctccggcgtcggcgaggacaatctcgtacgtatc
ccggttcagggtgaacaccgttcgatggattgtgcggcgctggaagcggcgatcctccgc
gacaaggcagccggctacgtgcccgccggcgtcatcgcctgtacaggcggcacgagcacc
ggcgcctgcgacaatatcgctgacgtcgttcgggtcgcccgcgcccatgacctttacgtg
catgtggacgcggcctgggccggctcggcgatgatctgcgaggaattccggcccctctgg
gccggcgtcgaggaagccgattccgtcgtcttcaacccgcacaagtggctcggcgcccag
ttcgactgctcggcgcatttcatccgaagcccggacgacctggtccgtacgctggcgatc
aagccggaatatttgaagacccacggcaaggacggcatcataaactattccgaatggacg
gtgccgcttggccggcgcttccgggcgctcaagctctggttcctcctgcggttccatggc
ctggaagggctgaaaggaatgatccgcaaccacgtcgcctgggcggagacgcttgccgag
cggctcggccgggaggacgggttcgagatcgtcacgaaaccgatcttctcgctcttctcc
ttccggcacttgggcagcggcgacctcgacgcccacaatctcgccctcgtcaacgccatc
aacgatgacgggcggatctacctgacccagacccgcgtcgatggacgggtggtgatccgt
ttccaggccgggcagttcgatatgactgagcaggacgccgacacggccttcgaggtcatc
accgaaatcgccaacagccttggcgccgcccgaaggtag
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