Rhizobium sp. Kim5: Kim5_CH03234
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Entry
Kim5_CH03234 CDS
T05501
Name
(GenBank) uracil-DNA glycosylase-like protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
rhk
Rhizobium sp. Kim5
Pathway
rhk03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rhk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Kim5_CH03234
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhk03400
]
Kim5_CH03234
Enzymes [BR:
rhk01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
Kim5_CH03234
DNA repair and recombination proteins [BR:
rhk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Kim5_CH03234
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
DUF2026
Motif
Other DBs
NCBI-ProteinID:
ARQ59264
LinkDB
All DBs
Position
complement(3243435..3244889)
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AA seq
484 aa
AA seq
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MRRVVLAGRGDLGEWRDAARALAAAGIVPEEIDWRERSAEADLSFQRDAMPPAPAASRKP
MTVPPAFIELAETVLCHSDPARFSLLYRLLWRLQLDRQLLEVTSDEDVVRARLMAKNVHR
DAHKMTAFVRFKEVGAVSARRRKFIAWFEPDHHIVRRTAPFFQRRFTDMDWLIATPKGSA
AWDGERLTISDEPCEKPNLSDATDELWRTYYINIFNPARLKVKAMQAEMPKKYWKNLPEA
DLIPGLIASAESKVREMAAREATQSLPFHDRLQQAARNLSAEPELPAGTLEALRAEAAVC
TRCPLHANATQTVFGEGPRDADVMFVGEQPGDQEDIAGRPFVGPAGRLFDQVIGEAGIDR
STLYVTNAVKHFKYEPRGKRRVHQKPNMGEVKHCRWWLDLELALVKPKLIVAMGATALAA
LTDVKGRLQDVRGRAMAIEGGRTLFVTVHPSYLLRIPDERLKAEEMARFREDMLEIQRLM
KAAA
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgggtcgtgcttgcaggacgaggtgatcttggcgaatggcgcgatgccgcacgt
gccttggcggcggccggcatagtgcctgaggagatcgactggcgcgaaagaagcgcggag
gcggatctttcgttccaacgcgacgccatgccgccggcgccggcagcatcacgcaagccg
atgacggtgccgcccgccttcatcgagcttgcagaaacagttctctgtcactccgatccg
gcgcgcttctcgctgctttaccgcctgctctggcggctgcagctggaccggcagctgctc
gaggtgacctccgacgaagatgtcgtacgcgcccggctgatggcgaaaaacgtgcatcgc
gatgcacacaagatgacggccttcgtccgcttcaaggaggttggcgcggtttccgcgagg
cggcgaaaattcatcgcctggttcgagcctgaccaccatatcgtccggcggacggcgccc
ttcttccaacgacgtttcaccgacatggactggctgatcgccacgcccaaggggtcggcc
gcctgggacggcgagcggctgacgatcagcgacgaaccttgcgagaagcccaatctcagc
gatgccaccgatgaactctggcgcacctactatatcaatatcttcaatccggcccggttg
aaggtgaaggcgatgcaggcggagatgccgaagaaatactggaagaacctgccggaggcc
gatctcattcctggcttgattgcatcggccgaaagcaaggtgcgggagatggcggcaagg
gaggcaacacaatcattgccttttcacgaccggctgcagcaggctgcgcgcaatctttcc
gccgagcccgagcttccggcaggcacactggaagcactgcgcgccgaggctgccgtctgc
acccgctgtccgcttcacgccaatgcgacgcagacggtcttcggggaggggccacgcgat
gcggatgtcatgttcgtcggcgagcagccgggcgatcaggaggatattgcggggcgccct
tttgtcggccctgcgggcaggcttttcgatcaggtgattggggaggcgggcatcgaccga
tcgacgctctacgtcaccaatgccgtcaagcatttcaaatacgagccgcgcggcaagcgg
cgcgtccaccagaagcccaatatgggtgaggtgaagcattgccgctggtggctcgatctg
gaattggcgctggtcaagccgaagctgatcgtcgccatgggggcgacggcacttgcggcg
ctgaccgatgtgaaaggccgcttgcaggatgtcagaggaagggcgatggcgatcgaagga
gggcgcacgctcttcgtgacggtgcatccatcctatctgctgcgcattcccgacgaacgg
ctgaaggccgaggagatggcgcgctttcgcgaggatatgttggaaattcaacggcttatg
aaagcagctgcataa
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