Rhizobium favelukesii: LPU83_2814
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Entry
LPU83_2814 CDS
T03046
Symbol
ligD
Name
(GenBank) DNA ligase (ATP)
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rhl
Rhizobium favelukesii
Pathway
rhl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rhl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LPU83_2814 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhl03400
]
LPU83_2814 (ligD)
Enzymes [BR:
rhl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LPU83_2814 (ligD)
DNA repair and recombination proteins [BR:
rhl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LPU83_2814 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CDM58465
UniProt:
W6RDU4
LinkDB
All DBs
Position
complement(2760833..2763346)
Genome browser
AA seq
837 aa
AA seq
DB search
MALEAYQAKRNFKVTPEPRGSRRGTKSAAPAALSFVIQKHDATRLHYDFRLELDGALKSW
AITRGPSLNPDEKRLAVHVEDHPLDYGDFEGTIPKGQYGGGTVLVWDRGTWTPNGDPHKG
YKKGHLEFDLDGEKLSGRWHLVRMHGKPAERQENWLLIKAEDEEARHKGDILKQRPESVK
SGRKIEEIAKHPDATWNSRPKGTSKPTSAKPAATPAKPKRHEWPKGAEKAAMPAFVKPEL
AKLKAKPPSGEGWIHEIKFDGYRLQIRLENGRATLLTRSGLDWTEKFGQEIVDAFAALPA
KSAILDGEIVVERENGASDFSSLQNDLSQGRHDRFVFYAFDLLYLDGYGLQQVRLTSRKE
LLLGLLADADGRLRYSEHFAEKGALVLDHVRQLGLEGIISKLADSEYVSGRTGEWVKSKC
LRRQELVIGGYVPSTSMKNAIGSLAMGVNRSGKLEHVGRVGTGFSVNVAQDLYDKLSAME
QSENSFDDELTAEERRGLVYVRPELVAEVEFQAWSADGNLRHAAFRGLRDDKAPEDVMPE
ATSKTAEELPQSSVTLTHPDRIYWPEEGITKQGLASYYARVWRFIEPYVTKRPLALLRCP
DGIGGQRFFQKHAWKGMNSNIEEITDPKDRGGEKLLRIMDFDGMIALVQSAVLEIHPWGA
TTGSWERPDMITMDLDPADDVSWTDVIAAADELKERLEAVGLAAFVKTSGGKGLHVVTPL
KPKASWTQVKAFAKALADGMSKDQPDKYLATATKAKRNGKIFIDYLRNGRGNTAVAAYST
RARPGAAVSMPLEWKELTEEIGPAYFTVDNAPARLDTLRSDPWADFFAAAVPLEKQK
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atggctctggaggcctatcaggcaaagcgcaatttcaaggtgacgccggagccgcgagga
agccggcgtggcaccaagtctgccgcgcctgcagcgctcagcttcgtcattcagaaacac
gatgcgacgagacttcactatgacttccggcttgagctcgatggcgcgctgaagagctgg
gccatcacacgcgggccaagcctcaatcccgatgaaaagcggcttgccgttcacgtcgaa
gatcacccgctggactatggcgacttcgaaggcaccatcccgaaggggcaatatggtggc
ggcacggtgcttgtttgggatcggggaacatggacgccgaatggcgatccgcataagggc
tacaagaagggccatctggagttcgacctcgacggtgagaaactcagcggccgctggcat
ctggttcggatgcacggcaaaccggccgagagacaggagaactggctgctcatcaaggcc
gaggacgaggaagcgcgccacaagggcgacattctcaaacagcggccggaatcggtcaag
agcggccgcaagatcgaagagattgccaagcaccctgacgccacctggaactcccgcccc
aagggcacgtcaaagccgacctccgccaagcctgcagcgaccccggccaagccgaaacgc
catgagtggccgaagggagccgaaaaggccgcgatgcctgcctttgtcaagcccgagctt
gccaagctcaaggccaaaccgccgtcgggcgaagggtggatccacgaaatcaaatttgac
ggataccggctgcagatacggcttgagaatggcagggcgaccctgctcacgcgcagcggc
ctcgattggaccgagaagttcggccaagagattgtcgatgctttcgcagcactgccggcc
aagtcagcgatcctcgatggagagatcgtcgtcgagcgggaaaacggcgcctccgacttt
tcgtccctccagaacgatctcagccaagggcgtcacgatcggtttgtcttttacgccttt
gatctgctttatctcgacggatacggcctgcagcaagtccggctcaccagccgcaaggag
ttgctgttgggtctgctggcagacgctgacggaaggctccgctacagcgagcatttcgcc
gagaagggtgccttggtgctggaccatgtccgccagctcggtcttgagggcatcatttcg
aaattggcggacagcgaatatgtgtccgggcgcacgggcgaatgggtcaaatcaaaatgc
ctgcggaggcaggaactggtcatcggcggctatgtgccgtcgacctcgatgaaaaatgcg
ataggctcgcttgccatgggcgtcaaccgcagcggcaagctcgagcatgtcggcagggta
ggaacgggcttcagcgtcaatgtcgcacaagatctctatgacaagttgtcggcgatggag
cagagtgagaattcgtttgacgatgaactcactgccgaagagcgccgtgggctggtctat
gtcaggccggagctcgttgccgaggtggagtttcaggcctggtcggccgacggcaacttg
cggcatgctgcgtttcgtggcttgagggacgacaaggcgccagaggatgtgatgcccgaa
gcaacaagtaagaccgctgaggaactgcctcagtccagcgtcacgctcacccacccggat
cgcatctactggccggaggagggcatcacaaaacaggggctggccagctactatgcgcgg
gtgtggcgcttcatcgaaccctatgtcaccaagcggccgctggcgctgctgcgttgtcct
gatggtattggcggacagcggttttttcagaagcatgcctggaagggcatgaattcgaat
atcgaagagatcaccgatccgaaggacaggggcggcgagaaattgctgcgcatcatggac
ttcgacgggatgattgcgcttgtccagtccgcggtgctggagatccatccctggggtgcc
acgacaggcagttgggaacggcccgacatgatcacgatggatcttgacccggctgatgac
gtcagctggacggatgtgatcgccgccgccgatgaactgaaggagcgtctggaggcggtc
ggtctcgcggccttcgtcaagacctccggcggcaaggggctgcatgtcgtgacgccgctg
aaaccgaaggccagctggacgcaggtcaaggccttcgccaaggcgctcgccgatggtatg
tcgaaagatcagccggataaatatctggcaaccgccacgaaggcgaagcggaacggcaag
atcttcatcgactatctgcgcaatgggcgcggcaatacggccgtcgccgcctattcgacg
cgagcacgccccggcgctgccgtctccatgccgcttgagtggaaagagctgaccgaggaa
atcggtccggcctatttcacggtcgacaacgctccggcgcgtctcgataccttgcgaagc
gatccgtgggcggacttctttgccgccgccgtcccgctcgagaagcaaaaataa
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