Rhizobium favelukesii: LPU83_pLPU83a0110
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Entry
LPU83_pLPU83a0110 CDS
T03046
Name
(GenBank) putative ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rhl
Rhizobium favelukesii
Pathway
rhl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rhl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LPU83_pLPU83a0110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhl03400
]
LPU83_pLPU83a0110
Enzymes [BR:
rhl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LPU83_pLPU83a0110
DNA repair and recombination proteins [BR:
rhl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LPU83_pLPU83a0110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
LinkDB
All DBs
Position
pLPU83a:complement(99844..100908)
Genome browser
AA seq
354 aa
AA seq
DB search
MPKPPRSKPLLRDTEAPIRSRPRGKRNPAQPQLLFDPMPERVEPALAQLKSHPPKGNEWS
WELKWDGYRLAVHIEPQGIRILTRGGHDWTHRFPAIEQAARALGPATMIIDGEAVVLDED
GRPDFGLLQQSLGASGKQAGNRASEAVLYAFDLVYLDGHDLRGVEYRSRRHLLEDTLNAP
GNDQVGAIRLSETLDAEPAVLLEHVCRVGLEGIVGKHLDRPYRSGRTGDWVKVKCIQSEA
FFIVGYERSAASLAGFGSLVLAAYRGDELVHVGSVGTGFKEVEAIRLRKMLDTLRWKRKQ
PPLPYSGSADVVWVEPTLIAEIEFRAWTTDGKLRHPSYKGLRERQDNADVFRLD
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgccgaagcctccgagatcaaaacccctccttcgcgacaccgaggccccgatccgttcc
cggccgcgcggcaagcgcaatccagctcaaccacagctgctgttcgatccaatgcccgag
cgtgtcgagcctgcgctggcgcaactgaagtcccatcccccaaagggaaacgagtggagc
tgggagctgaaatgggatggctatcgcctcgccgttcatatcgagccgcaggggatccgg
atcctcacgcgtggcggccatgactggacgcatcggtttccggcaatagagcaggccgcc
cgagcgctcgggccggcgacgatgatcatcgatggcgaagccgtcgtgctcgacgaagac
gggcggccggatttcgggctactgcagcaatcgctgggcgcatccggtaaacaggctggc
aaccgtgcctccgaagccgtcctctacgctttcgatcttgtttatctggacgggcatgat
ctgcgcggtgtcgaataccgttcgcgccgacaccttctcgaggacacgttaaacgcccca
gggaatgaccaggtcggcgccattcgactatctgaaacactcgatgccgaaccagctgtc
ctgctggagcatgtctgccgcgtcggcctggaaggtatcgtcggcaagcacctcgaccgg
ccctatcgctcgggccggaccggcgattgggtaaaggtcaaatgcatccagagcgaggcc
ttcttcatcgtcggctatgagaggtcggcagcatcccttgccggcttcggctcgttggtg
ctcgccgcgtatcgtggtgatgagctcgtccacgtcggaagcgtcggcacgggattcaaa
gaagtcgaggcgatcaggctgcgaaagatgctggacacgctgcgatggaagcgaaagcaa
ccgcccctgccctattccggaagtgcagatgttgtctgggtcgaaccgaccttgattgcc
gagatcgagtttcgcgcctggacgacagacgggaaactccgtcatccgtcctacaaaggc
ctgcgagaacgccaggacaatgccgacgtcttccggctcgactag
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