Rhizobium sp. N1341: AMJ98_PA00076
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Entry
AMJ98_PA00076 CDS
T04420
Name
(GenBank) ATP-dependent DNA ligase protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rhn
Rhizobium sp. N1341
Pathway
rhn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rhn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AMJ98_PA00076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhn03400
]
AMJ98_PA00076
Enzymes [BR:
rhn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AMJ98_PA00076
DNA repair and recombination proteins [BR:
rhn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AMJ98_PA00076
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
ANL12022
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All DBs
Position
pRspN1341a:complement(55764..56843)
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AA seq
359 aa
AA seq
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MARRTTSKPLLTDDTAPARSRPRKPRDPAQPRLLLDPMPSRVEPCLALLKSKPPKGPDWL
YEVKWDGWRGAIHIEPSGVVRVLTKNGHDWSKRFPAVVEGAKQLGVASAILDGEIVCFDE
QGRSDFNLLQQSLGGARGSRPVAEAAFMAFDLLYLDGHDFRNTELSVRRHLLENLIPGDT
ALKFSEEFDADPDDFFAAAEKHGLEGIIAKDRNSLYRSGRLGDWLKIKCVASDAFVIVGY
EPSIGAYGGFGSLLLAARKAGQLVYVGSVGTGFKEREANALRKMMDKLTWKKKAPPIPYS
GKRQVVWQQPTLIAEIAYRGWSADGKLRHSSYKGLREQQDDAIIFDLDSYELKKLSERS
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atggcccgacgaacgacatccaagcccctcctgaccgacgacaccgcgcctgcgcgatcc
cggccgagaaagccgcgcgatccggcgcagcctcgtcttctgctcgatcccatgccgtcc
agagtggagccgtgcttggctctcctgaaatcgaagccgccaaaggggcctgattggctg
tatgaggtcaaatgggatggctggcgcggggcgatccacatcgagccgtcgggagtggtc
cgcgtcctgacgaagaacggccacgactggtcgaagcgcttccctgctgtcgtcgaaggg
gcgaagcagctcggcgtcgcaagcgcgatcttggacggggagatcgtctgctttgatgag
caagggcgatccgacttcaacctgttgcagcagtccctcggcggcgctcgtggcagccgt
cccgtagcggaggccgccttcatggcgttcgacctcctgtacctggacggccatgacttc
cggaataccgaactgagcgtaaggcggcaccttctcgagaatctgatacccggagatacg
gccctcaagttctcggaggaattcgacgccgatcccgacgacttcttcgcggcggccgag
aaacacggccttgaaggtatcatcgcgaaagatcggaattcgctctatcgatccggccgt
ctcggggactggttgaagatcaaatgcgtggcctcggatgcctttgtcatcgtcggctat
gagccatcgatcggagcctacggcggattcggatcgctcctgctcgcggctcgcaaggcg
ggccagctcgtctacgtcggcagtgtgggcacgggcttcaaggagcgcgaggcgaacgcg
ctgcgcaagatgatggacaagctgacctggaagaagaaagcgccgcccatcccctactct
ggaaagcgccaggtggtgtggcagcagccgacgctcattgcggagatcgcatatcgggga
tggagcgccgacggcaagctccggcattccagctataaggggctgcgtgagcagcaagac
gatgcgatcatctttgatttggacagctacgagctaaagaagttgtccgaaagatcataa
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