Rhodoferax sp. BAB1: HTY51_17225
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Entry
HTY51_17225 CDS
T08955
Symbol
dacB
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
rhob
Rhodoferax sp. BAB1
Pathway
rhob00550
Peptidoglycan biosynthesis
rhob01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rhob00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
HTY51_17225 (dacB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rhob01002
]
HTY51_17225 (dacB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rhob01011
]
HTY51_17225 (dacB)
Enzymes [BR:
rhob01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
HTY51_17225 (dacB)
Peptidases and inhibitors [BR:
rhob01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
HTY51_17225 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:
rhob01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
HTY51_17225 (dacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S13
Beta-lactamase2
Transpeptidase
Phage_Coat_B
Motif
Other DBs
NCBI-ProteinID:
QKO23511
UniProt:
A0A6N0BU21
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All DBs
Position
complement(3557211..3558659)
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AA seq
482 aa
AA seq
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MSTLRTSLLPLLASLLLLAGSPAQARETALPPSVIKALARAKVPVEAVGVVVEEAGGDSR
PLLSHRAGTPMNPASVMKLVTTLAALETLGPTWNWRTPVYVEGTAREGTLYGNVYIQGQG
DPKLVVERLWLLLRRVQGLDIRNIAGDIVLDRSAFEAVAHDPAEFDGEPLRPYNAAPDAL
LLNFKSVLLTFVPDRGANAAHVHVEPPLAGVTWPSHVPLRETECNDYRSTLRADFSDPTL
PRFAGRYPAACNEKIWPLAYADPASYGPRAIEGMWRAIGGQLQGKVRYGAVPEGLAPAFA
LESPPLAEVVRDINKYSNNVMTQQLFLTLSLQQQGRGTLAGSRELLQEWWRERFGAGEVP
QIANGSGLSREDRMTAGALARLLQYAWTSPLMPELMSSLPISGQDGTLRPSRWRAKGSAH
LKTGSLRDVASVAGFVHADGGRRYVLVAMVNHPNAGATRPAMEALVEWVAQQPARGRKKK
DD
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaccttgcgcacctcgctcctgcccttgctcgccagcttgctgctcctggccggc
agcccggcccaggcccgggaaaccgccctcccccccagcgtgatcaaggcgctggcgcgc
gccaaggtgccggtcgaagccgtgggtgtggtggtcgaggaagccggaggcgacagccgg
ccgctgctcagccaccgcgcgggcacgcccatgaacccggcctcggtgatgaaactggtg
accaccctggccgcgctggaaaccctggggccgacctggaactggcgcacaccggtgtac
gtggaaggtacggcgcgcgagggcacgctctacggcaacgtctacatccagggccagggt
gatcccaagctggtggtcgaacgcctgtggctgctgctgcgccgtgtgcagggcctggac
atccgcaacatcgcgggtgacatcgtgctcgaccgcagcgccttcgaagccgtcgcccac
gaccccgccgaattcgacggcgagccgctgcgcccctacaacgcagcgcccgatgcgctg
ctgctgaacttcaagtcggtactcctgaccttcgtgcccgaccgtggcgccaacgccgca
cacgtgcacgtggagccgccgctggccggcgtgacctggcccagccacgtgccgctgcgc
gagaccgaatgcaacgactaccgcagcacgctgcgtgccgacttctccgacccgacgctg
ccgcgcttcgccggccgctatccggcggcctgcaatgaaaaaatctggcccctagcctat
gccgatccggccagctacggaccgcgcgccatcgagggcatgtggcgcgccattggcggc
cagctgcagggcaaggtgcgctacggcgccgtgcccgaaggcctggcgccggccttcgca
ctcgagtcaccgccgctggccgaggtggtgcgcgacatcaacaagtacagcaacaacgtg
atgacgcagcagctcttcctcacgctgagcctgcagcagcagggccgcggcacgctggcc
ggctcgcgtgagttgctgcaggaatggtggcgcgagcgctttggtgccggcgaggtgccg
cagatcgccaacggctcgggcctgtcgcgtgaggaccgcatgacggccggcgcactggcg
cgcctgctgcagtacgcctggacctcgccactgatgcccgaactcatgagctccctgccc
atcagcggccaggacggcacgctgcgtcccagccgctggcgcgccaagggcagcgcgcat
ctgaaaaccggcagcctgcgcgacgtggcgtccgtcgccggtttcgtgcatgccgacggt
ggccggcgctacgtgctggtcgccatggtgaaccaccccaacgccggcgccacgcgcccg
gccatggaagccctggtggagtgggtagcgcagcagccggccaggggccggaagaaaaaa
gacgactga
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