Rhizobium sp. S41: BA939_17720
Help
Entry
BA939_17720 CDS
T05451
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rhv
Rhizobium sp. S41
Pathway
rhv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rhv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BA939_17720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhv03400
]
BA939_17720
Enzymes [BR:
rhv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BA939_17720
DNA repair and recombination proteins [BR:
rhv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BA939_17720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ANV25829
LinkDB
All DBs
Position
2:complement(636514..637401)
Genome browser
AA seq
295 aa
AA seq
DB search
MNDTRPPQSAIQFTHPERLYWPDDGVTKEGLADYYAQVWKQMAPFVVNRPLALLRCPEGI
EGQRFFQKHAWRGINKAIEQIRDPKDKAGEPLIRITDFDGMMALVQSAALEIHPWGATTA
SWEKPDMITMDIDPAEDVSWENVIEAALELKRRFEAAGLAAFVKTSGGKGLHVVAPLKPQ
AGWTAVKAFAKAMAADMSKVEPDRYLSVATKAKRKGRIFIDYLRNGRGNTAVAPYSTRAR
PGAAVSAPLEWSELTADIGPAHFTVNNIGARLSALKNDPWEGFFAAAEVLPEKAR
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgacaccaggccgccgcagtctgccatccagttcactcacccggagcgcctctac
tggccggatgacggcgtgacgaaggaaggtcttgccgattattatgcccaggtctggaag
cagatggcgcccttcgtggtcaacaggccgctggcgctgctgcgctgcccggagggtata
gaagggcagcgttttttccagaaacacgcctggcgcggcatcaacaaggccatagaacag
atcagggatccaaaggacaaggccggtgagcccctgatccgcatcaccgattttgacggc
atgatggcgctcgtgcagtctgcggcgcttgaaatccacccgtggggagcgaccaccgcg
agctgggaaaagccggatatgatcaccatggatatagatcccgccgaggatgtctcctgg
gagaatgtgatagaggcggcgctcgaactgaagcggcgttttgaagcggcgggtctggca
gctttcgtcaagacatcaggcggcaaggggcttcatgtagttgccccgctgaagccgcag
gcgggctggacggcggtcaaggcatttgccaaagccatggccgcagacatgtcgaaggtc
gagccggacaggtatctctcggtcgcaaccaaggcaaaacgcaaaggccggattttcatc
gactatctgcgcaacggtcgcggcaataccgcggtggcgccttattcgacccgggcgcgg
ccgggtgcggcggtctccgcccccctcgaatggtccgaactcacggccgatatcggtcct
gcccacttcacggtcaacaatatcggggcacgtctttccgcactgaagaatgatccctgg
gagggcttttttgccgccgcggaggttttgccggaaaaggcgcgctaa
DBGET
integrated database retrieval system
