Rhodococcus sp. WMMA185: BFN03_04765
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Entry
BFN03_04765 CDS
T04814
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rhw
Rhodococcus sp. WMMA185
Pathway
rhw03420
Nucleotide excision repair
rhw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BFN03_04765
03430 Mismatch repair
BFN03_04765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhw03400
]
BFN03_04765
Enzymes [BR:
rhw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BFN03_04765
DNA repair and recombination proteins [BR:
rhw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BFN03_04765
MMR (mismatch excision repair)
Other MMR factors
BFN03_04765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
DUF746
Motif
Other DBs
NCBI-ProteinID:
AOW92255
UniProt:
A0A1D8T455
LinkDB
All DBs
Position
1070870..1074184
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AA seq
1104 aa
AA seq
DB search
MNIRIDPVDLAIGLGQHPPTPEQQAVISADPGPTLVVAGAGAGKTETMAARVVWLVANGL
VDPGAVLGLTFTRKAAQQLTRRIRNRLARLAGSELLRRVDPSGDLRSRIRAGEPEVSTYH
SYAGRLLSEHGLLLPIEPSATLLSETELWQLAYRVVSSWDGDLDTDRNPASVTEAVLALS
GQLAEHLVEPDDLRQAHTELDKLVHTLPAGPRQRGGPGKELLDILDTQHRRVELLPLVAR
LADTLRREGALDFGSQMSLAARVASSHPEVGLAERRRFRAVLLDEYQDTGHSQRVLLSSL
FGGGLDADLAVTAVGDPMQSIYGWRGASAANLPRFATDFPRSGGEPAPTLELLTSWRNPP
EALALANMASASLRERGVPVSTLRARPDAVSGDVRLALTTDVVQEREWVADRIAEQYAEA
AESGANPPTAAVLIRRNVDAAPVAEVLRSRGLPVEVVGLGGLLHTPEVADVIAMLRVVAD
PMAGSAAVRMLTGARWRIGASDLVALSRRAAELAIGARYGTTGAVTDPSALADAVGVALP
GEHAEQAGLADALADPGPAERYSPVGYARITAVAGELASLRERIGQPLTELVAEVERVLG
IGIEAQARTGLPGPGSAGREHLDAFADVVSGYAARSSATLTGLLAFLSAAESVEKGLAPG
EVEVDPHRVQVLTVHSAKGLEWEVVAVPHLTAGVFPSRTASGTWLGALGELPPTLRGDRA
RPGESDDGVPVLELEDVYDRRDLEDSVKAHKAALAARKLDEDRRLFYVALTRTERVLFAS
GHHWAESGTEPKGPSDFLAELRDMVTDEAHEGIGVVDIWAPAPGPDEGNPLTSLPKSAQW
PQDPLGLRRESVERGAALVLEALKGAGGTDQEGEADDPDNWAADVDALLAEREARMNARA
EVVLPSQLSVSQLVELEADPDALAARLRRPLPYPPNPLARRGTAFHAWVERRFGASRLLD
LDELPGAADAGAGPDSDLVTLQEAFLQSSWAERIPVDVEVPFETSLAGTVLRGRIDAVFE
DPDGGWTVIDWKTGKEPSTANEKAVVMQLAAYRLAWAELAGADVERVRAAFHYVRTGRTI
APDDLPDADGLARLIRTAGAEDGK
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atgaacatccgcatcgatccagtggatctggcgatcggcttgggccaacacccgccgacc
cccgagcagcaggcggtcatcagtgcggatcccggcccgaccctcgtcgtcgcgggggca
ggtgcgggaaaaaccgagaccatggcggctcgcgtcgtgtggttggtggccaacggcctc
gtagacccgggtgccgtgttgggcctgaccttcacccgcaaggcagcgcagcagctgacc
agaaggatcaggaatcgccttgcccggctggcgggttcggagctgctccgcagagtcgac
ccgagcggtgatctcaggtccaggattcgcgctggcgagccggaggtcagcacctaccac
tcgtacgccgggcggctgttgtccgagcacggtctcctgttgccgatcgagccgtcggcc
acgctgctgtcggaaacggaactgtggcagctcgcgtatcgggtggtgagctcgtgggac
ggcgatctcgacaccgaccggaatccggcgtcggtcactgaagccgtgctcgcgctgtcc
ggacagttggccgagcacctcgtcgaaccggacgacctgcgacaggcgcacaccgaactc
gacaagttggttcacacgctgcccgcaggcccgcgtcagcgtggcggccccggtaaggaa
ctgctcgacatcctcgacactcagcatcggcgagtggaattgcttcccttggtggctcgt
ctggcggacacgctgcgccgcgagggtgcgctcgacttcggcagccagatgtcgctggcc
gcgcgggtggcttcgagccatcctgaggtgggactggccgagcgccgccggtttcgggca
gtgctgctcgacgagtaccaagacacggggcactcgcaacgagtgctgctgtcttcgctg
ttcggtggcggactcgacgccgatctcgctgtcacagcagtcggcgacccgatgcagtcc
atctacggctggcgaggggcatcggcggccaaccttccccggtttgcgacggacttcccg
cggtccggcggtgaacctgcgcctacgctcgaactgctcacaagctggcgcaatccaccg
gaggccttggccctggccaacatggcctcggcctcactgcgtgagcggggcgtgccggtc
agcacgctgcgagcgcgaccggatgcggtctccggtgacgtccggctggcactgaccacc
gacgttgtgcaggaacgtgaatgggtcgcggatcggatcgctgagcagtacgcggaggcg
gcggaatcgggggcaaacccgccgaccgctgccgtactgattcgccgaaacgtggatgcc
gcaccggtcgcggaagtgcttcgctcccgaggattgcccgtcgaggtggtcggcctcggt
ggattgctgcatacccccgaggtggccgacgtgatcgcaatgctgcgggtagtcgccgac
ccgatggcgggtagcgccgccgtgcgcatgctgactggggcgcggtggaggatcggggct
tccgacttggtagcgctgtctcgaagggcggccgaactggccatcggagccagatacggc
acgaccggtgccgtcaccgatccgtccgctctcgccgatgctgtcggtgtggccctgccc
ggtgagcatgccgagcaagcagggctcgcggatgctctggcggatcccggacccgccgaa
cgctattcgccggtcggctatgcacggataaccgcagtggcgggcgaattggcctctctg
cgtgagcggatcggacagccgctcaccgaactggtagccgaagtcgagcgcgtactcggt
atcggaatcgaagcgcaggcccggacgggattgccgggacccggaagtgcagggcgcgag
catctcgacgcattcgctgacgtcgtttccggctacgcggctcgttcgtcggccacactg
accgggctcctggcgttcctttcggccgcagaatctgtcgagaagggtttggcaccggga
gaggtcgaagtggacccacaccgcgtccaggtccttacggtgcactcggcgaaagggctc
gagtgggaggttgtggcggtcccgcacctcaccgcgggtgtgttcccgtcgcgaactgct
tcggggacctggctcggcgcgctcggcgagctgccgccgacattgcgcggcgaccgggcc
cggccgggagagtcggacgacggcgtaccagtgctcgaactcgaggacgtgtacgaccgt
agggatctcgaagattcggtgaaggcgcacaaggcggcgctggcagcacgcaaactcgac
gaggaccggcggttgttctacgtagcactcaccaggacggaacgcgtactgttcgcctcc
gggcaccactgggcagagtcgggaaccgagccgaagggtccgtcggacttcctggctgag
ttgcgtgacatggtgaccgatgaggcccacgagggaatcggggtcgtcgacatatgggcc
ccggcgcccggaccagacgaagggaatccgctcaccagcctgccgaagtcggcgcagtgg
ccgcaggacccactcggcctccggcgcgaatctgtcgagcgaggtgcagcactggtcttg
gaggcgctgaagggggccggggggaccgaccaggaaggcgaggccgacgaccctgacaat
tgggcggccgatgtagatgccctccttgcggagagagaggcacgcatgaacgctcgcgcc
gaggttgtgctgccaagccagctgtcggtcagtcagttggtcgagctcgaggccgatccc
gacgcgctggcggccaggttgcggcgtccgctgccgtatccacccaacccgctcgcccgt
cggggtaccgccttccatgcctgggtggagcgccgattcggggcgtcccgactgctggac
ctagacgagttgcccggtgccgcagacgcgggggcgggaccggattccgatctcgtgacc
ctccaggaagccttcctgcaatcgtcctgggcggagcgtatcccggttgacgtcgaggtt
ccgttcgagacctcgttggccgggacagtgttgcgcgggcgaatcgatgcggtgttcgaa
gacccggacggtggatggacggtgatcgactggaagaccggcaaggagccgagcacggcg
aatgagaaggccgtggtgatgcagctggctgcctaccgactggcctgggccgagctggca
ggcgccgacgtggagcgggtgcgagccgcgttccactacgtgcgcacgggccggacgatt
gcgccggacgacctgcccgatgcagatggcctcgcgcgtctcatccgcactgccggggcc
gaagacggcaaataa
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