Rhodoferax koreense: RD110_01330
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Entry
RD110_01330 CDS
T04721
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
rhy
Rhodoferax koreense
Pathway
rhy03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rhy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RD110_01330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhy03400
]
RD110_01330
Enzymes [BR:
rhy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
RD110_01330
DNA repair and recombination proteins [BR:
rhy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
RD110_01330
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Glyco_hydro_47
DUF383
Motif
Other DBs
NCBI-ProteinID:
APW40399
UniProt:
A0A1P8K324
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All DBs
Position
complement(287424..288245)
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AA seq
273 aa
AA seq
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MFKLTSLNLNGIRSATTKGVEAWIAATGPDCICVQEVKAQAADVRGRFEQLAGLQGHFHF
AEKKGYSGVAVYSKHVPSEVVTGYGSAEFDAEGRYVELRFDTPTRKLSVISCYFPSGSSG
ELRQQAKFRFLAEFLPHLARLKATREFILCGDVNIAHREMDLKNWRSNQKNSGFLPEERA
WMTHLLARADLDPLAADGLGLVDVYRLLQPDTTDTAYTWWSNRGQAYANNVGWRLDYHLA
TPATAALARSEHIYKDVKFSDHAPLTVEYDMVI
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
ttgttcaagttaaccagcctcaatctcaacggcatccgctccgccaccaccaagggtgtc
gaagcctggattgccgcgaccggcccagattgtatttgtgtccaggaagtcaaggcccag
gccgccgacgtgcgcggccgcttcgaacaactggccggcctgcagggccatttccacttc
gccgagaagaaggggtattcgggcgtggccgtgtacagcaagcatgtgccgagcgaggtc
gtgacgggctatgggtcggccgaattcgacgccgaaggccggtatgtggagttgcgcttc
gacacgccgacgcgcaagctatcggtcatcagctgctatttccccagcggctcctcgggt
gaactgcgccagcaggccaaattccgcttcctcgcggagttcctgccgcacctggcgcgg
ctcaaggccacgcgtgagttcatcctgtgcggcgacgtgaacatcgcgcaccgcgaaatg
gatctgaagaactggcgcagcaaccagaagaacagcggcttcctgcccgaggagcgcgcc
tggatgacccacctgctggcccgtgccgacctcgacccgctggccgccgacggcctgggc
ctggtcgacgtctaccgcctgctgcaacccgacaccaccgacaccgcctacacctggtgg
agcaaccgcggccaggcgtatgcgaacaacgtgggatggcggctcgactaccacctggcg
acacccgccacggcggcgctggcgcgcagcgaacacatctacaaggacgtgaagttcagc
gaccacgcaccgctgaccgtcgaatacgacatggtcatctga
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