Rhizobium indicum: FFM53_019965
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Entry
FFM53_019965 CDS
T07009
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
rii
Rhizobium indicum
Pathway
rii03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FFM53_019965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rii03400
]
FFM53_019965
Enzymes [BR:
rii01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
FFM53_019965
DNA repair and recombination proteins [BR:
rii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
FFM53_019965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
QKK18591
LinkDB
All DBs
Position
4132373..4133827
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AA seq
484 aa
AA seq
DB search
MRRVVLAGRGELAEWRDAARAFAVAGILPEEIDWREKSEEADLAFQRDAMPPAPIMARKP
MTVPPAFIDLAETVLCHSDAARFSLLYRLLWRLQLDRQLLEVASDEDVARARLMAKNVRR
DAHKMTAFVRFKEVGAVSVGRRKFLAWFEPDHHIVRRTAPFFQRRFTDMDWLIATPKGSA
AWDGERLTMSDEPCEKPNLIDATDELWRTYYASIFNPARLKLKAMQAEMPKKYWKNLPEA
DLIPGLIASAESQVRAMAAREATQSLPFHDRLQEAARSIPAEPEAPAGTLEALRAEAAAC
TRCPLHAKATQTVFGEGPRDAEVMFVGEQPGDQEDISGRPFVGPAGRLLDQVITEAGIDR
STLYVTNAVKHFKYEPRGKRRIHQKPNMGEVKHCRWWLNLEMALIKPKLIVAMGATALAA
LTDTKQRLQDVRGKAIAIDEERTLFVTVHPSYLLRIPDERLRAEELARFREDMLMVQRLM
VAAA
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgggtcgtgcttgcaggacgcggggagcttgccgaatggcgtgacgccgcgcgc
gctttcgcggtcgccggcatcctgccggaagagatcgattggcgcgaaaaaagcgaggag
gcggaccttgcgtttcaacgcgacgccatgccgccggcgcctatcatggcacgcaagccg
atgacggtgccgcccgccttcatcgatctcgcggagacagttctctgccattccgacgcg
gcgcgtttttccctgctttaccgtctgctctggcggctgcaactggaccggcaactgctt
gaagtggcttccgacgaggacgtcgcccgtgccaggctgatggcgaaaaacgttcggcgc
gacgcgcacaagatgacggccttcgttcgcttcaaggaggttggtgcggtgtcggtgggc
cgtcgaaaattcctcgcctggttcgagccggatcaccatatcgtcaggcgcacagcgccc
ttctttcaacggcgcttcaccgacatggactggctgatcgcgacgcccaagggatcggcc
gcctgggacggcgagcggctgacgatgagcgacgaaccgtgtgaaaaacccaatctcatc
gatgctaccgacgaactttggcgcacctactacgccagcattttcaatccggcgcggttg
aagctgaaggcgatgcaggcggagatgccgaaaaaatactggaagaacctgccggaagcc
gatctcatccctgggctgatcgcatcggcggagagccaggtgcgggccatggctgcacgg
gaggcgacccagtcgttgccctttcacgatcgcctgcaggaagccgcgcgcagcattccg
gccgagcccgaagcgccggcgggcacgctggaagcactgcgcgcggaagctgccgcctgc
acccgctgtccgcttcatgcgaaggccacgcaaaccgtattcggggaggggccacgcgat
gccgaggtgatgttcgttggcgagcagccgggcgaccaggaggatatatcagggcgcccc
ttcgtcggtccggccggcaggctgctggatcaggtgatcactgaagcgggcattgatcgc
tcaacgctttacgtcaccaatgccgtcaagcatttcaaatatgagccgcgcggcaagcgt
cgcatccatcagaagcccaatatgggcgaggtgaagcattgccgctggtggctcaatctg
gagatggcactgatcaagccgaagctcatcgttgcgatgggggcgacggcgctcgcggcg
ctgaccgatacgaaacagcggcttcaggatgtcagggggaaagcgatcgcgatcgatgag
gagcgaacgctcttcgtgacggtgcatccatcctatctgctgcgtattcccgatgagcgg
ctgagagcggaggaactggcacgatttcgcgaagatatgctgatggttcagcgccttatg
gtggccgctgcataa
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