Agrobacterium pusense IRBG74: BN877_II1716
Help
Entry
BN877_II1716 CDS
T02867
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rir
Agrobacterium pusense IRBG74
Pathway
rir03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BN877_II1716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rir03400
]
BN877_II1716
Enzymes [BR:
rir01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BN877_II1716
DNA repair and recombination proteins [BR:
rir03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BN877_II1716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
CDI11501
UniProt:
U4QCW8
LinkDB
All DBs
Position
linear:1814595..1815482
Genome browser
AA seq
295 aa
AA seq
DB search
MNDTRPPQSAIQFTHPERLYWPDDGVTKEGLADYYAQVWKQMAPFVVNRPLALLRCPEGI
EGQRFFQKHAWRGINKAIEQIRDPKDKAGEPLIRITDFDGMMALVQSAALEIHPWGATTA
SWEKPDMITMDIDPAEDVSWEDVIEAALELKRRFEAAGLAAFVKTSGGKGLHVVAPLKPQ
AGWTAVKAFAKAMAAEMSKAEPDRYLSVATKAKRKGRIFIDYLRNGRGNTAVAPYSTRAR
PGAAVSAPLEWSELTADIGPAHFTVNNIGPRLSALKNDPWEGFFAAAEVLPKKAR
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgacaccaggccgccgcagtctgccatccagttcactcacccggagcgcctctac
tggccggatgacggcgtgacgaaggaaggtcttgccgattattatgcccaggtctggaag
cagatggcgcccttcgtggtcaacaggccgctggcgctgctgcgctgcccggagggtata
gaagggcagcggtttttccagaaacacgcctggcgcggcatcaacaaggccatcgaacag
atcagggatcccaaggacaaggccggcgaaccactaatccgcatcaccgattttgacggc
atgatggcgctcgtgcagtcggccgcccttgaaatccacccgtggggagcgaccaccgca
agctgggaaaagccggatatgatcaccatggatatcgatcccgccgaggatgtttcctgg
gaggatgtgatagaagcggcgctcgaactgaagcggcgttttgaagcggcgggtctggca
gctttcgtcaagacatcaggcggcaaggggcttcatgtagttgccccgctgaagccgcag
gcgggctggacggcagtcaaggcatttgccaaagccatggccgcagagatgtcgaaggcc
gagccggacaggtatctctcggtcgcaaccaaggcaaaacgcaaaggccggattttcatc
gactatctgcgcaacggtcgcggcaataccgcggtggcgccttattcgacccgggcgcgg
ccgggtgcggcggtctccgcccccctcgaatggtccgaactcacggccgatatcggtcct
gcccacttcacggtcaacaatatcgggccacgtctttccgcactgaagaatgatccctgg
gagggcttttttgccgccgcggaggttttgccgaaaaaggcgcgctaa
DBGET
integrated database retrieval system
