Rhinichthys klamathensis goyatoka (western speckled dace): 130087297
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Entry
130087297 CDS
T09701
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rkg03009
]
130087297 (pdcd11)
Ribosome biogenesis [BR:
rkg03009
]
Eukaryotic type
90S particles
Other 90S particles
130087297 (pdcd11)
BRITE hierarchy
Motif
Pfam:
S1
Spt6_S1
TPR_19
Suf
NRDE-2
PPR
RnlA_toxin_N
Phage_hub_GP28
Motif
Other DBs
NCBI-GeneID:
130087297
NCBI-ProteinID:
XP_056109526
LinkDB
All DBs
Position
Unknown
AA seq
1825 aa
AA seq
DB search
MASLEEDFPRGGAEKKTSGPKHVKTHDVDNLFESRETLVKKKKKKDVEHDEEKTRKKQKV
DEENLKLNTATSVEILHLRNLKIGTLMLGCVKEVSEFEVVVGLPSGLVGYLPIYNICDSY
TKILNNRLDSEDSSEEVVPLSQLLTPGMLVRCVVSSLDSAKEGHVSLKVSVNPKDVNKVL
SSGTLKPGMTLSGCVESVEDHGYLVDIGVIGTKAFLPKKSIASKQDLNVGQYVSILIEEV
KNDGRVVRLCQNPQVLAKACAMAQHGWTLDTLLPGLLIRACVKRVTPHGLIVTYLSSFTG
VVDFLHLDEDKASTYSQGQEVLARVLHVEPSTRHVSLSLRSHLLPPGGAVLDVFCSERMG
EVVQGCKITDLHYHSGAVIKMPDGTTAFVHKNLTKEPKEEFNPNRLLSQSEHSLRIIDYS
PMEQIHLVTLRRSTIEMTFFRYQDIKVGQIVEGKVADLQEHGVFVRITDHIRGMIPRIHL
ADVVLKNPEKMFYEGLKVKCRVLSMDVQKKRLILTRKKALVESQLPIFQSYSDARVGRIS
HGVIVFVKQFGCIVRFYGDVKGLVPVGELSAECVENPEGLFFIGQVVQAKVLRCDPENKK
LCLSFKAVTEGDIKVEQTEKFDFVIGKPVNVRVCRKVLDGLEVSIVPEEAPAFIPIVHLS
DHVTNCLPLWMALEEGDTISNIMCLSKNKKKGITLTKKPLLKACLEDGNIPQRFSELQVG
MQMLGWVKNIMPYGVFVDFPHGLFGLAPKDAMGDQFITNTSGVFEIGRSVVALVTHLDEE
KQRFLVSLKVSELSLLEQGAHARLVQGLKERKSIFEMVSGRGESDVLQQLSAVSLGDKIK
VTVGDTREDGSVTLTSDRLSEATVLASKSHTEGVNVTPGCKFSAVILHVDPLKSEVHVSL
LPKLITNKKKLTKDSTFTATIQYTDKDFAVVSLGDTGHLTIIPLKTHLNNILDSKKFSVG
SHLNVTVEDPSSEELGGLPLVAFQHPDTKHKQPKSKSKRPSRELILGEVMTVTVKKLKPM
NVLVTLPSGTTGSIHVSQIEESPAVGSFPTSSLKVGTEVEARVIGGHTIRGHNFLAISHP
DYGVSIPELSLLPRTLKAGDKQSVETNFTPGDEVLCFPSTYNEGKKMLEVDVKPNLTGTV
ELLAMIKKPGQANQPKKLFKPGQTVSAKVVGVSFNKTQLRLSLSLTGMYKLEQGLVTMAT
VRKVEPHQGLSLHLPFENWGFASVTDLSDAYADNPLEPYKQGQLVRCYITEEVKERNFSV
SLRPSRLHKDQQDITDPDIESISDIKEGQIIRGYVTSINDKGIFVRLSRAITGRVQFQHA
TKYFMNDPKSVSEYITLNALVTAKVLSVNAENSHVNLSLLSGDTGKPDLLPKSLDLKIRL
TGEKKVKYDEKTAKRKRALSESQQQDDETVGQKIKRKKDEECPVKGERTEEKKPVKEKKK
KKKKTKTEDSDSGVDVFFREKEETTLDKKCGQVKGKHEETEPKRLQVTFGFPWESTLGSL
TPFAAVDDTLESSEDEQEVTSKPVKKSRKELKQEQQNSEQRLSKLETELMDTSVRPDSYT
AFERLLLSSPDSSLLWLQYMAFHLQATEIEQARAVAERALKTISFREEQEKLNVWVAMLN
LENMYGTPDSLQKIFERAIQYCEPLPVYQQLADVYAKSDKIKEAESLYKNMVKRFRQEKS
VYLSYGTFLLRQRQSDATNALLQKALQSLSNKDHVDLIAKFARLEFQYGNTERGKSMFDK
VLSTYPKRTDLWSVFIDLMVKHGSQREVRELFDRVIHLSVSVKKIKFFFKRYLEYEKTNG
TPESIQAVKRKAVEYVESKGAEAAS
NT seq
5478 nt
NT seq
+upstream
nt +downstream
nt
atggcatctttggaggaagatttcccccgtggcggtgcagagaagaagacctctgggccc
aaacatgttaagacacatgacgtggacaatctttttgaatcacgtgaaacactggttaag
aagaagaagaagaaggacgtggaacatgatgaagagaaaacccgtaaaaaacagaaagtg
gatgaagagaatttaaaacttaatactgccacttctgtggaaattcttcatcttcggaat
ctgaagattggcactctgatgctgggttgtgtgaaggaagtgtcagagtttgaggtggta
gttggtctcccaagcggtctcgttggttacctgccgatctacaacatctgtgactcctac
accaagattctcaataacagactggactctgaagacagttcagaggaagtcgtccctctc
tcgcaactacttactccaggaatgctggtcagatgtgttgtgtcgtctttagactccgct
aaggagggtcatgttagtcttaaagtgtcagtcaacccaaaagatgttaacaaggttttg
agttcaggcactttgaaacctggaatgactctgagtggttgtgtggagagtgtggaagat
cacggatacctggttgacatcggagtcattggcactaaagctttcctgcccaaaaagagc
attgcctcaaaacaagatctgaatgtgggtcagtacgtgtcgatcctgatcgaggaagtc
aagaacgatggacgtgtggtgcgtctgtgccagaatccccaggttctcgcaaaggcctgt
gctatggctcagcatggatggactctagacaccctcctgcctggacttctgatccgcgca
tgcgtgaagagggttactcctcacgggcttatcgtgacgtatctttcatctttcaccgga
gttgttgattttcttcaccttgatgaggacaaggcatcgacctacagccaaggacaggag
gtcctggcacgggttttgcatgtggagccgtccacacggcatgtgagcctgtccctgcgc
agtcatctcctgccaccagggggcgctgtgctggatgtgttctgcagcgagcggatgggt
gaggtggtgcagggctgcaagattactgatctgcactatcactcaggagccgtgattaag
atgcccgacggtaccacagcctttgtgcataaaaacctcacgaaggagccaaaagaagag
ttcaacccaaaccgcttgctgtcccagtctgaacactctctgagaatcatagattacagt
cctatggagcaaattcacctggtcacactgcgcaggagcactattgaaatgaccttcttc
agatatcaagacatcaaagtgggacaaattgttgagggtaaagttgcggatttgcaggaa
catggcgttttcgtgaggataacggaccacatcagaggaatgatacccagaattcacctt
gccgatgtcgtcctaaagaacccagagaagatgttttatgagggcttgaaagtcaagtgc
agggtattatcaatggatgttcagaaaaagaggttgatcctgaccaggaaaaaggccctt
gttgagtcccaactcccgatcttccagtcctactctgatgccagggtgggccgcatctct
cacggcgtcatcgtgtttgtgaagcagtttggctgtattgtccggttctatggagatgtg
aagggtctggttcctgtgggggagctgtccgccgagtgtgtggaaaatccagaaggcctc
ttcttcatcggccaggtggttcaggccaaagtcttgaggtgtgacccggaaaataagaag
ctatgtttatccttcaaggccgttactgagggagatataaaggtggagcagactgagaaa
tttgactttgtgattggaaagccagtcaatgtaagagtttgccgcaaagtcctggatggt
ctggaagtctccattgttcctgaagaggctccggctttcatacccatagtgcatctctct
gatcatgtgaccaactgccttcccctgtggatggcgttggaggagggtgacaccatctct
aatataatgtgtctcagcaagaacaagaagaagggaattactctcaccaagaaaccccta
ctgaaggcctgtctggaggacggcaacatcccgcagaggttctccgagctccaggtgggg
atgcagatgctgggctgggtgaagaacatcatgccttatggagtcttcgtcgatttcccg
cacggactcttcggcctcgctcctaaagatgctatgggtgaccagttcatcacaaacaca
tcaggcgtctttgagatcggccggtcggttgttgccctagtgacccatctggacgaagaa
aagcaaaggtttttggtcagcctgaaggtgtcagaattgagtctcttggagcaaggtgcc
cacgccagactggtccagggtctgaaggaaaggaagtccatctttgagatggtttctggc
agaggggagtctgacgtcctacaacagctctctgctgtgtcgctcggagataaaatcaag
gtgacggtgggagataccagagaggacggctcggtcacactgacctcggatcggctcagt
gaagccactgtgttggcctcgaagtcccacacagaaggcgtgaatgtgactccgggctgc
aaattcagcgcagtgattctccatgttgaccctttaaagtctgaggtccacgtgtcgctg
cttcctaagttgatcacgaacaagaagaagttgacaaaggactccacgttcactgcaaca
atccagtacaccgataaagactttgctgtcgtctcattgggtgacactggtcacctgacc
atcattccccttaagactcacttaaataacatcttggattcaaagaagttttcagttggt
tcccatctgaatgtgaccgtggaggacccgagcagcgaggaattaggaggacttcctctt
gtagcgttccagcaccctgataccaaacacaagcagcctaaatccaagagcaaacgtcca
tcccgtgagctcattcttggggaagtgatgacggtcacagtaaagaagttgaagcccatg
aacgtgctggtgacgctgccgtcggggaccacaggaagtatccatgtgtctcagatagag
gagtctcctgcggtcggcagcttcccaacatcatccctgaaggtcgggaccgaggtcgaa
gccagagtgattggagggcacacaattcgtggtcacaatttcctggcaatctctcacccc
gactatggtgtttccatacctgaactcagtcttctgcccagaacactgaaagctggtgac
aagcagtcagttgagacaaacttcacacctggagatgaagtcttgtgcttcccgtcaacg
tacaacgaaggaaaaaaaatgttggaagttgatgtgaagcccaacctcactggaaccgtt
gagctgttagccatgattaaaaaacctgggcaagctaatcaaccaaagaagctgtttaaa
ccaggacagaccgtttctgctaaggttgttggtgttagtttcaacaagactcaactacga
ctttctctgtcactcacagggatgtacaagctggagcaagggttggtcactatggcgacg
gttcggaaagttgagcctcaccagggattgtcgcttcatctcccatttgagaattggggt
tttgcttcggtaacggatctctccgatgcatatgcagacaacccactggagccctacaaa
cagggccaactagtccggtgctatattactgaggaggttaaagagaggaacttcagcgtt
tcattacgcccctccagattgcataaggaccagcaagatattacagacccagacattgag
tcaatttccgatataaaagagggccagattatccgaggatatgtgacgtctattaacgat
aaaggcatatttgtgaggttatcaagggccatcactggaagagttcagttccaacacgct
acaaaatacttcatgaacgacccaaaatctgtttccgaatacattaccctgaatgcactg
gtgacggccaaggttctcagtgtgaacgcagagaacagccacgtgaacctgtcgctcctg
tcgggggacactgggaaaccagatcttcttccaaaatctcttgatctaaaaatacgtctg
acaggagagaagaaagtgaaatatgacgaaaaaactgccaagaggaaacgagctctttct
gagagccaacaacaagacgatgagacagttggacagaagataaaaaggaaaaaagatgaa
gaatgcccagtgaagggagaacgcacagaagagaagaaacccgtaaaagagaagaagaag
aagaaaaagaaaacaaaaaccgaggacagtgacagtggtgtagatgtgtttttcagagag
aaggaagaaactacattggataaaaagtgtggccaagtaaagggtaagcatgaggaaaca
gaaccaaaacggctgcaggtgacatttggctttccatgggaatcaacgctgggatcttta
acacctttcgccgcagtagacgacacccttgaatccagtgaggatgagcaggaagtcacg
agcaagcctgtgaaaaagtcccgtaaagagttaaagcaggagcagcagaattcggagcag
cggctcagcaagctggagacggagctcatggacacgtctgtacgacccgacagctacacg
gcgtttgagcgtctgctcctgtcgtctccggacagctccctcctctggctgcagtacatg
gctttccatctgcaggccacggagatcgagcaggcgcgcgcagtcgcagagagagccctc
aaaaccatctccttcagagaggaacaggaaaagctgaacgtgtgggtggccatgctgaat
ctggagaacatgtacgggacaccagacagtttgcagaaaatctttgaacgggccatccaa
tactgtgaacctcttcctgtgtaccagcagcttgccgacgtttatgccaagtcggacaag
atcaaagaggctgagagtctttataaaaacatggtgaaacgcttcagacaggagaaatct
gtatatctgagttacggcaccttcctgctacgccagcgtcagagcgacgctacaaatgcc
ctccttcagaaggcgctgcagagcctgtccaataaagatcacgtggacctgattgccaaa
tttgcccggttggagtttcagtatgggaatactgagagaggcaaatccatgtttgacaag
gtcctgagtacctaccccaaacgcacagacctgtggtccgtcttcatagatctgatggtg
aagcacggctctcagagggaagtgagggagctttttgaccgtgtgattcacctaagcgtg
tcggtgaagaagatcaagttcttcttcaagcgctacctggagtacgagaagacaaacggc
acacctgagagcatccaggcggtcaaacggaaagcggtggaatacgtggagtcgaaagga
gccgaagccgccagctag
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integrated database retrieval system
